1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gaaaacccacaattggaaacttatcatctgtcctttgagtttttacagaccacatggtgtataataatatgactaatcaaatgcaatgcacgtatgccagCCTTTCAGGGACATGATAGAAGGGATGCGGTCAGACCTCAGAAAGACTAGATACAAGAACTTCGACGAGCTCTACATGTACTGCTACTATGTTGCTGGAA
species | Oryza sativa |
transcript | LOC_Os06g51290.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGATGCTGCACTTTCTGATACCATCTCCAAGTTTCCTATAGATATTCAG CCTTTCAGGGACATGATAGAAGGGATGCGGTCAGACCTCAGAAAGACTAGAEST: gi|29682683|gb|CB678958.1|CB678958
genomic: TTGATGCTGCACTTTCTGATACCATCTCCAAGTTTCCTATAGATATTCAGgtaactagct ... cgtatgccagCCTTTCAGGGACATGATAGAAGGGATGCGGTCAGACCTCAGAAAGACTAGA
EST: TTGATGCTGCACTTTCTGATACCATCTCCAAGTTTCCTATAGATATTCAG CCTTTCAGGGACATGATAGAAGGGATGCGGTCAGACCTCAGAAAGACTAGAEST: gi|157651867|gb|EX451501.1|EX451501
genomic: TTGATGCTGCACTTTCTGATACCATCTCCAAGTTTCCTATAGATATTCAGgtaactagct ... cgtatgccagCCTTTCAGGGACATGATAGAAGGGATGCGGTCAGACCTCAGAAAGACTAGA
EST: TTGATGCTGCACTTTCTGATACCATCTCCAAGTTTCCTATAGATATTCAG CCTTTCAGGGACATGATAGAAGGGATGCGGTCAGACCTCAGAAAGACTAGAEST: gi|29617650|gb|CB622662.1|CB622662
genomic: TTGATGCTGCACTTTCTGATACCATCTCCAAGTTTCCTATAGATATTCAGgtaactagct ... cgtatgccagCCTTTCAGGGACATGATAGAAGGGATGCGGTCAGACCTCAGAAAGACTAGA
EST: TTGATGCTGCACTTTCTGATACCATCTCCAAGTTTCCTATAGATATTCAG CCTTTCAGGGACATGATAGAAGGGATGCGGTCAGACCTCAGAAAGACTAGAEST: gi|38476677|gb|CF960810.1|CF960810
genomic: TTGATGCTGCACTTTCTGATACCATCTCCAAGTTTCCTATAGATATTCAGgtaactagct ... cgtatgccagCCTTTCAGGGACATGATAGAAGGGATGCGGTCAGACCTCAGAAAGACTAGA
EST: TTGATGCTGCACTTTCTGATACCATCTCCAAGTTTCCTATAGATATTCAG CCTTTCAGGGACATGATAGAAGGGATGCGGTCAGACCTCAGAAAGACTAGA
genomic: TTGATGCTGCACTTTCTGATACCATCTCCAAGTTTCCTATAGATATTCAGgtaactagct ... cgtatgccagCCTTTCAGGGACATGATAGAAGGGATGCGGTCAGACCTCAGAAAGACTAGA
cagaccacatggtgtataataatatgactaatcaaatgcaatgcacgtatgccagCCTTTCAGGGACATGATAGAAGGGATGCGGTCAGACCTCAGAAAGACTAGATACAAGAACTTCGACGAGCTCTACATGTACTGCTACTATGTTGCTGGAA
gactaat putative branch site (score: 2)
tataataatatgacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaaacccacaattggaaacttatcatctgtcctttgagtttttacagaccacatggtgtataataatatgactaatcaaatgcaatgcacgtatgccagCCTTTCAGGGACATGATAGAAGGGATGCGGTCAGACCTCAGAAAGACTAGATACAAGAACTTCGACGAGCTCTACATGTACTGCTACTATGTTGCTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- aaaccca
- - - - - - - - - - - - catctgt
- - - - - - - - - - - - - - - - - - - - - - - - - cacatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgca