1 5' 3' | 2 5' 3' | 3 5' 3' |
...tggttttgccattgtattgatatacgcatattacatatgccttacatttcctttctttcgtctgcaatttttgggactaaatcgtttttcgtcgtaccagTGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTCCATGAGATGAAATGCTATGTTGGTCCAGACTTCCGCTACGAAGGAGATG
species | Oryza sativa |
transcript | LOC_Os06g50870.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAG TGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTCEST: gi|89171275|gb|CI040552.1|CI040552
genomic: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAGgtatgcatgt ... gtcgtaccagTGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTC
EST: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAG TGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTCEST: gi|87014426|gb|CI283938.1|CI283938
genomic: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAGgtatgcatgt ... gtcgtaccagTGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTC
EST: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAG TGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTCEST: gi|87017335|gb|CI301371.1|CI301371
genomic: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAGgtatgcatgt ... gtcgtaccagTGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTC
EST: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAG TGCTGCGGGTGEST: gi|89162620|gb|CI099312.1|CI099312
genomic: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAGgtatgcatgt ... gtcgtaccagTGCTGCGGGTG
EST: CACTGACGGCACTGTCTTTGTTCAG TGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTCEST: gi|88211922|gb|CI211562.1|CI211562
genomic: CACTGACGGCACTGTCTTTGTTCAGgtatgcatgt ... gtcgtaccagTGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTC
EST: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAG TGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTCEST: gi|88993664|gb|CI112568.1|CI112568
genomic: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAGgtatgcatgt ... gtcgtaccagTGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTC
EST: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAG TGCTGCGGGTGCAACATATTCGATAAGCTGGTGGACAACCTGAACCTGTTCEST: gi|86823325|gb|CI256326.1|CI256326
genomic: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAGgtatgcatgt ... gtcgtaccagTGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTC
EST: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAG TGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTCEST: gi|88506378|gb|CI433884.1|CI433884
genomic: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAGgtatgcatgt ... gtcgtaccagTGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTC
EST: AACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAG TGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTCEST: gi|86528443|gb|CI168649.1|CI168649
genomic: AACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAGgtatgcatgt ... gtcgtaccagTGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTC
EST: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCGTTGTTCAG TGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTCEST: gi|88511832|gb|CI439338.1|CI439338
genomic: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAGgtatgcatgt ... gtcgtaccagTGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTC
EST: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAG TGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTCEST: gi|86862735|gb|CI331633.1|CI331633
genomic: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAGgtatgcatgt ... gtcgtaccagTGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTC
EST: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAG TGGCTGCGGGTGCAACATATTCCATAAGGCTGGTGGACAACCTGAACCTGTEST: gi|88958197|gb|CI095716.1|CI095716
genomic: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAGgtatgcatgt ... gtcgtaccagT-GCTGCGGGTGCAACATATTCCATAA-GCTGGTGGACAACCTGAACCTGT
EST: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAG TGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTCEST: gi|86254564|gb|CI059291.1|CI059291
genomic: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAGgtatgcatgt ... gtcgtaccagTGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTC
EST: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAG TGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTCEST: gi|88210783|gb|CI210632.1|CI210632
genomic: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAGgtatgcatgt ... gtcgtaccagTGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTC
EST: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAG TGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTCEST: gi|88242849|gb|CI240700.1|CI240700
genomic: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAGgtatgcatgt ... gtcgtaccagTGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTC
EST: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAG TGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTCEST: gi|88383305|gb|CI540718.1|CI540718
genomic: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAGgtatgcatgt ... gtcgtaccagTGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTC
EST: TCTTTGTTCAG TGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTCEST: gi|86498184|gb|CI140817.1|CI140817
genomic: TCTTTGTTCAGgtatgcatgt ... gtcgtaccagTGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTC
EST: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAG TGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTCEST: gi|87028314|gb|CI263656.1|CI263656
genomic: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAGgtatgcatgt ... gtcgtaccagTGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTC
EST: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAG TGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTC
genomic: CGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAGgtatgcatgt ... gtcgtaccagTGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTC
atttcctttctttcgtctgcaatttttgggactaaatcgtttttcgtcgtaccagTGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTCCATGAGATGAAATGCTATGTTGGTCCAGACTTCCGCTACGAAGGAGATG
gactaaa putative branch site (score: 6)
tttttcgtc putative PPT
aattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggttttgccattgtattgatatacgcatattacatatgccttacatttcctttctttcgtctgcaatttttgggactaaatcgtttttcgtcgtaccagTGCTGCGGGTGCAACATATTCCATAAGCTGGTGGACAACCTGAACCTGTTCCATGAGATGAAATGCTATGTTGGTCCAGACTTCCGCTACGAAGGAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - tgccatt
- - - - - - - - - - - - - - - - -catatgc