Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtttataatctttcgtgctttttttttgtgtgtttgccatttgaactgttattcatcagacctttttttttgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCAAGGGTCTTGATGTGATTCAGCAAGCTCAGTCAGGAACAGGAAAGACTGC

Basic information

species Oryza sativa
transcript LOC_Os06g48750.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g48750.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G027995_T01 (Zea mays), 3'ss of exon 3
gtaggtttataatctttcgt--gctttttttttgtgtgtttgccatttgaactgttattcatcagac--ctttttttttgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCAAGGGTCTTGATGTGATTCAGCAAGCTCAGTCAGGAACAGGAAAGACTGC
||||| |   | ||||  ||     || | |||  | |  |     || |  || ||||| ||  ||  |   || || | | | ||||||| ||||| || || || |||||||| || || ||||| || ||||||||||| |||||||| ||||||||||| || || || ||||||||||| ||
gtaggctgggagtcttctgtttatcttctgttttagcgagtttttctttacatggtattcctcgtactacccattcttcgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAAGGGGCTTGATGTCATTCAGCAAGCACAATCTGGTACAGGAAAGACAGC

upper sequence: LOC_Os06g48750.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G116034_T01 (Zea mays), 3'ss of exon 3
gtaggtttataatctttcgtgctttttttttgtgtgtttgccatttgaactgttattcatcagac--ctttttttttgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCAAGGGTCTTGATGTGATTCAGCAAGCTCAGTCAGGAACAGGAAAGACTGC
||||| |   | ||  | ||       ||| |  |||| ||| |||  | || ||||  ||  ||  |   ||  ||||  | ||||||| |||||||| || || |||||||| || || ||||| || |||||||||||||||||||| ||||||||||| || || || ||||||||||| ||
gtaggctgggagtcgcttgt-------tttagcatgtt-gccttttaca-tggtatttctcttactgcccattccttgtggtgtagGTTTTGAGAAGCCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAAGGGTCTTGATGTCATTCAGCAAGCACAATCTGGTACAGGAAAGACAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58687017|gb|CK075704.1|CK075704
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|29681409|gb|CB677684.1|CB677684
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|58662423|gb|CK051109.1|CK051109
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|58670875|gb|CK059561.1|CK059561
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|58692318|gb|CK081005.1|CK081005
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|29617450|gb|CB622462.1|CB622462
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|27554015|gb|CA997915.1|CA997915
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|218497636|gb|FG960442.1|FG960442
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|88696339|gb|CI739914.1|CI739914
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCACAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTA
EST: gi|29634490|gb|CB639499.1|CB639499
EST:     CGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGAAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|58678446|gb|CK067133.1|CK067133
EST:     GACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTTGTCCCTTTCTGC
genomic: GACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTA-TTGTCCCTTTCTGC
EST: gi|29618198|gb|CB623210.1|CB623210
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|218485038|gb|FG946136.1|FG946136
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|58685069|gb|CK073756.1|CK073756
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|58694481|gb|CK083168.1|CK083168
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|58693858|gb|CK082545.1|CK082545
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|29666501|gb|CB662776.1|CB662776
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|58681442|gb|CK070129.1|CK070129
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|58659178|gb|CK047858.1|CK047858
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|29681779|gb|CB678054.1|CB678054
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|86894141|gb|CI306080.1|CI306080
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|56158541|gb|AU094758.2|AU094758
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|218489120|gb|FG943252.1|FG943252
EST:     ATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: ATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|58652969|gb|CK041649.1|CK041649
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|29657788|gb|CB654063.1|CB654063
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|29617425|gb|CB622437.1|CB622437
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|112785749|gb|EE591334.1|EE591334
EST:     TGATGACATGGGTCTCCAAGAGAACCTTTTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|86891788|gb|CI310020.1|CI310020
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|58596902|gb|CK007430.1|CK007430
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|29683861|gb|CB680136.1|CB680136
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|29687377|gb|CB683652.1|CB683652
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|58690915|gb|CK079602.1|CK079602
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|29657751|gb|CB654026.1|CB654026
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|218490871|gb|FG947377.1|FG947377
EST:     CTCA-AGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: CTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|58660365|gb|CK049045.1|CK049045
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|58677625|gb|CK066312.1|CK066312
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|58662665|gb|CK051351.1|CK051351
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|58608944|gb|CK036977.1|CK036977
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|58657174|gb|CK045854.1|CK045854
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|29664636|gb|CB660911.1|CB660911
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|218485882|gb|FG950582.1|FG950582
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|86829570|gb|CI286756.1|CI286756
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGCGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|58686621|gb|CK075308.1|CK075308
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|29666236|gb|CB662511.1|CB662511
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|29666235|gb|CB662510.1|CB662510
EST:     TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
EST: gi|58653271|gb|CK041951.1|CK041951
EST:     TGATGACATGGGGCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATG                         GTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA
genomic: TGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 73 (downstream exon)
Score: 537

GGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGAGAGTTTTGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTATGCCTATGgtaggtttat ... tgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCAAGGGTCTTGATGTGATTCAGCAAGCTCAGTCAGGAACAGGAAAGACTGC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgtgtttgccatttgaactgttattcatcagacctttttttttgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCAAGGGTCTTGATGTGATTCAGCAAGCTCAGTCAGGAACAGGAAAGACTGC
                                   cctttttttttgtttt  CT-rich tract
                                     tttttttttgttttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaggtttataatctttcgtgctttttttttgtgtgtttgccatttgaactgttattcatcagacctttttttttgttttatagGTTTCGAGAAGCCTTCAGCCATTCAGCAAAGGGGTATTGTCCCTTTCTGCAAGGGTCTTGATGTGATTCAGCAAGCTCAGTCAGGAACAGGAAAGACTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA