1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaaaaaaaaacagacctctctctctctctctagaacagtatggccattgcgctttcttatatttctcatttgtcctgatccttcttgacagGTTGGGAAATTATGGTTTGGCCGAGTTTCAAATAGAGGGTGATGGAAATTGTCAG
species | Oryza sativa |
transcript | LOC_Os06g45850.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCCCTAATCTTGATAATGCAACTTTGGATCATGAAAGATTGTCGGAAAG GTTGGGAAATTATGGTTTGGCCGAGTTTCAAATAGAGGEST: gi|58682991|gb|CK071678.1|CK071678
genomic: ATCCCTAATCTTGATAATGCAACTTTGGATCATGAAAGATTGTCGGAAAGgtaaaaaaaa ... ttcttgacagGTTGGGAAATTATGGTTTGGCCGAGTTTCAAATAGAGG
EST: ATCCCTAATCTTGATAATGCAACTTTGGATCATGAAAGATTGTCGGAAAG GTTGGGAAATTATGGTTTGGCCGAGTTTCAAATAGAGGGTGATGGAAATTG
genomic: ATCCCTAATCTTGATAATGCAACTTTGGATCATGAAAGATTGTCGGAAAGgtaaaaaaaa ... ttcttgacagGTTGGGAAATTATGGTTTGGCCGAGTTTCAAATAGAGGGTGATGGAAATTG
agtatggccattgcgctttcttatatttctcatttgtcctgatccttcttgacagGTTGGGAAATTATGGTTTGGCCGAGTTTCAAATAGAGGGTGATGGAAATTGTCAG
tcctgat putative branch site (score: 3)
tcctgatccttctt CT-rich tract
ttatatttctcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaaaaaaacagacctctctctctctctctagaacagtatggccattgcgctttcttatatttctcatttgtcctgatccttcttgacagGTTGGGAAATTATGGTTTGGCCGAGTTTCAAATAGAGGGTGATGGAAATTGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA