1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tggtatatgctctggcttatacgagtgaacaagtgcacatgaatgtctgaaactctgaatgcagccatttcatgccagtgatcgtgcctgtgatttgcagGTTATCTGAATGACCCGGAGTCCACGAAGAACACCATCGACAAGGGCGGTTGGCTGCACACAGGAGACATTGGTTATGTTGACGACGACGACGAGATTTT
species | Oryza sativa |
transcript | LOC_Os06g44620.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAACCAGTCCGGGGAGATTTGCATCCGGGGAGAACAAATCATGAAAG GTTATCTGAATGACCCGGAGTCCACGAAGAACACCATCGACAAGGGCGGTTEST: gi|29664259|gb|CB660534.1|CB660534
genomic: GAACCAGTCCGGGGAGATTTGCATCCGGGGAGAACAAATCATGAAAGgtagtatatc ... tgatttgcagGTTATCTGAATGACCCGGAGTCCACGAAGAACACCATCGACAAGGGCGGTT
EST: CCGGAACCAGTCCGGGGAGATTTGCATCCGGGGAGAACAAATCATGAAAG GTTATCTGAATGACCCGGAGTCCACGAAGAACACCATCGACAAGGGCGGTTEST: gi|29664258|gb|CB660533.1|CB660533
genomic: CCGGAACCAGTCCGGGGAGATTTGCATCCGGGGAGAACAAATCATGAAAGgtagtatatc ... tgatttgcagGTTATCTGAATGACCCGGAGTCCACGAAGAACACCATCGACAAGGGCGGTT
EST: CCGGAACCAGTCCGGGGAGATTTGCATCCGGGGAGAACAAATCATGAAAG GTTATCTGAATGACCCGGAGTCCACGAAGAACACCATCGACAAGGGCGGTTEST: gi|58666259|gb|CK054945.1|CK054945
genomic: CCGGAACCAGTCCGGGGAGATTTGCATCCGGGGAGAACAAATCATGAAAGgtagtatatc ... tgatttgcagGTTATCTGAATGACCCGGAGTCCACGAAGAACACCATCGACAAGGGCGGTT
EST: CCGGGGAGATTTGCATCCGGGGAGAACAAATCATGAAAG GTTATCTGAATGACCCGGAGTCCACGAAGAACACCATCGACAAGGGCGGTTEST: gi|29676730|gb|CB673005.1|CB673005
genomic: CCGGGGAGATTTGCATCCGGGGAGAACAAATCATGAAAGgtagtatatc ... tgatttgcagGTTATCTGAATGACCCGGAGTCCACGAAGAACACCATCGACAAGGGCGGTT
EST: CCGGAACCAGTCCGGGGAGATTTGCATCCGGGGAGAACAAATCATGAAAG GTTATCTGAATGACCCGGAGTCCACGAAGAACACCATCGACAAGGGCGGTTEST: gi|58611802|gb|CK039514.1|CK039514
genomic: CCGGAACCAGTCCGGGGAGATTTGCATCCGGGGAGAACAAATCATGAAAGgtagtatatc ... tgatttgcagGTTATCTGAATGACCCGGAGTCCACGAAGAACACCATCGACAAGGGCGGTT
EST: CCGGAACCAGTCCGGGGAGATTTGCATCCGGGGAGAACAAATCATGAAAG GTTATCTGAATGACCCGGAGTCCACGAAGAACACCATCGACAAGGGCGGTTEST: gi|29659175|gb|CB655450.1|CB655450
genomic: CCGGAACCAGTCCGGGGAGATTTGCATCCGGGGAGAACAAATCATGAAAGgtagtatatc ... tgatttgcagGTTATCTGAATGACCCGGAGTCCACGAAGAACACCATCGACAAGGGCGGTT
EST: CCGGAACCAGTCCGGGGAGATTTGCATCCGGGGAGAACAAATCATGAAAG GTTATCTGAATGACCCGGAGTCCACGAAGAACACCATCGACAAGGGCGGTTEST: gi|29673469|gb|CB669744.1|CB669744
genomic: CCGGAACCAGTCCGGGGAGATTTGCATCCGGGGAGAACAAATCATGAAAGgtagtatatc ... tgatttgcagGTTATCTGAATGACCCGGAGTCCACGAAGAACACCATCGACAAGGGCGGTT
EST: CCGGAACCAGTCCGGGGAGATTTGCATCCGGGGAGAACAAATCATGAAAG GTTATCTGAATGACCCGGAGTCCACGAAGAACACCATCGACAAGGGCGGTTEST: gi|29623323|gb|CB628334.1|CB628334
genomic: CCGGAACCAGTCCGGGGAGATTTGCATCCGGGGAGAACAAATCATGAAAGgtagtatatc ... tgatttgcagGTTATCTGAATGACCCGGAGTCCACGAAGAACACCATCGACAAGGGCGGTT
EST: CCGGAACCAGTCCGGGGAGATTTGCATCCGGGGAGAACAAATCATGAAAG GTTATCTGAATGACCCGGAGTCCACGAAGAACACCATCGACAAGGGCGGTT
genomic: CCGGAACCAGTCCGGGGAGATTTGCATCCGGGGAGAACAAATCATGAAAGgtagtatatc ... tgatttgcagGTTATCTGAATGACCCGGAGTCCACGAAGAACACCATCGACAAGGGCGGTT
tctgaaactctgaatgcagccatttcatgccagtgatcgtgcctgtgatttgcagGTTATCTGAATGACCCGGAGTCCACGAAGAACACCATCGACAAGGGCGGTTGGCTGCACACAGGAGACATTGGTTATGTTGACGACGACGACGAGATTTT
atttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtatatgctctggcttatacgagtgaacaagtgcacatgaatgtctgaaactctgaatgcagccatttcatgccagtgatcgtgcctgtgatttgcagGTTATCTGAATGACCCGGAGTCCACGAAGAACACCATCGACAAGGGCGGTTGGCTGCACACAGGAGACATTGGTTATGTTGACGACGACGACGAGATTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - -tgctctg
- - - - - - - - - - - - - - -caagtgc
- - - - - - - - - - - - - - - - - - - atgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcctg