1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtcgccgcgccagatttgtcccctcctctttgtgcttttttggtttagcatccggtttgggagaattagggtttcggtcggtcggtggtgcagGTACCAGCGCCTGGTGTTCAGGCACAAGCTGTATCAACTGCGGGAGGAGAGGGACATGAAGCCCCAGACCTTCGCCAGCCTCGTCTCCGCTCTCCTCTAC
species | Oryza sativa |
transcript | LOC_Os06g43570.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GACAAGCTCTACATCGGCCTCTCCGGCCTCGCCACCGACGCGCAGACGCT GTACCAGCGCCTGGTGTTCAGGCACAAGCTGTATCAACTGCGGGAGGAGAGEST: gi|42414357|gb|CK664997.1|CK664997
genomic: GACAAGCTCTACATCGGCCTCTCCGGCCTCGCCACCGACGCGCAGACGCTgtgagtcgcc ... ggtggtgcagGTACCAGCGCCTGGTGTTCAGGCACAAGCTGTATCAACTGCGGGAGGAGAG
EST: GACAAGCTCTACATCGGCCTCTCCGGCCTCGCCACCGACGCGCAGACGCT GTACCAGCGCCTGGTGTTCAGGCACAAGCTGTATCAACTGCGGGAGGAGAGEST: gi|218491138|gb|FG948648.1|FG948648
genomic: GACAAGCTCTACATCGGCCTCTCCGGCCTCGCCACCGACGCGCAGACGCTgtgagtcgcc ... ggtggtgcagGTACCAGCGCCTGGTGTTCAGGCACAAGCTGTATCAACTGCGGGAGGAGAG
EST: GACAAGCTCTACATCGGCCTCTCCGGCCTCGCCACCGACGCGCAGACGCT GTACCAGCGCCTGGTGTTCAGGCACAAGCTGTATCAACTGCGGGAGGAGAGEST: gi|218483130|gb|FG953131.1|FG953131
genomic: GACAAGCTCTACATCGGCCTCTCCGGCCTCGCCACCGACGCGCAGACGCTgtgagtcgcc ... ggtggtgcagGTACCAGCGCCTGGTGTTCAGGCACAAGCTGTATCAACTGCGGGAGGAGAG
EST: GACAAGCTCTACATCGGCCTCTCCGGCCTCGCCACCGACGCGCAGACGCT GTACCAGCGCCTGGTGTTCAGGCACAAGCTGTATCAACTGCGGGAGGAGAGEST: gi|29666365|gb|CB662640.1|CB662640
genomic: GACAAGCTCTACATCGGCCTCTCCGGCCTCGCCACCGACGCGCAGACGCTgtgagtcgcc ... ggtggtgcagGTACCAGCGCCTGGTGTTCAGGCACAAGCTGTATCAACTGCGGGAGGAGAG
EST: GACAAGCTTTACATCGGCCTCTCCGGCCTCGCCACCGACGCGCAGACGCT GTACCAGCGCCTGGTGTTCAGGCACAAGCTGTATCAACTGCGGGAGGAGAGEST: gi|25806911|gb|CA762872.1|CA762872
genomic: GACAAGCTCTACATCGGCCTCTCCGGCCTCGCCACCGACGCGCAGACGCTgtgagtcgcc ... ggtggtgcagGTACCAGCGCCTGGTGTTCAGGCACAAGCTGTATCAACTGCGGGAGGAGAG
EST: GACAAGCTCTANATCGGCCTTTCGGGCCTCGCNACCGACGCGCAGACGCT GTACCAGCGCCTGGTGTTCAGGCACAAGCTGTATCAACTGCGGGAGGAGAG
genomic: GACAAGCTCTACATCGGCCTCTCCGGCCTCGCCACCGACGCGCAGACGCTgtgagtcgcc ... ggtggtgcagGTACCAGCGCCTGGTGTTCAGGCACAAGCTGTATCAACTGCGGGAGGAGAG
tttggtttagcatccggtttgggagaattagggtttcggtcggtcggtggtgcagGTACCAGCGCCTGGTGTTCAGGCACAAGCTGTATCAACTGCGGGAGGAGAGGGACATGAAGCCCCAGACCTTCGCCAGCCTCGTCTCCGCTCTCCTCTAC
agaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcgccgcgccagatttgtcccctcctctttgtgcttttttggtttagcatccggtttgggagaattagggtttcggtcggtcggtggtgcagGTACCAGCGCCTGGTGTTCAGGCACAAGCTGTATCAACTGCGGGAGGAGAGGGACATGAAGCCCCAGACCTTCGCCAGCCTCGTCTCCGCTCTCCTCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC