1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtatcttgataaatattttcatgaatataattccttattttccccaaaagtacacacacacctacaatatgctgcatctggctcattactgctgacttttgcagCCTGACAAGACAACCGGTACTATCAAGGAGCAACTAGAAGCAATATCACCTTTCTTGGAGAAACTCTGCAGGGAAAAAGATAAGAGGGTTAGAGAGTTTG
species | Oryza sativa |
transcript | LOC_Os06g40840.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCTTTCTAGACTCCTTTGTGCACTAGGCGAGCTGTCTATTTATGGGATT CCTGACAAGACAEST: gi|88363588|gb|CI618149.1|CI618149
genomic: AGCTTTCTAGACTCCTTTGTGCACTAGGCGAGCTGTCTATTTCTGGCATTgtaagtatct ... acttttgcagCCTGACAAGACA
EST: AGCTTTCTAGACTCCTTTGTGCACTAGGCGAGCTGTCTATTTCTGGCATT CCTGACAAGACAACCGGTACTATCAAGGAGCAACTAGAAGCAATEST: gi|88381767|gb|CI682440.1|CI682440
genomic: AGCTTTCTAGACTCCTTTGTGCACTAGGCGAGCTGTCTATTTCTGGCATTgtaagtatct ... acttttgcagCCTGACAAGACAACCGGTACTATCAAGGAGCAACTAGAAGCAAT
EST: AGCTTTCTAGACTCCTTTGTGCACTAGGCGAGCTGTCTATTTCTGGCATT CCTGACAAGACAACCGGTACTATCAAGGAGEST: gi|32948220|gb|BP184792.1|BP184792
genomic: AGCTTTCTAGACTCCTTTGTGCACTAGGCGAGCTGTCTATTTCTGGCATTgtaagtatct ... acttttgcagCCTGACAAGACAACCGGTACTATCAAGGAG
EST: AGCTTTCTAGACTCCTTTGTGCACTAGGCGAGCTGTCTATTTCTGGCATT CCTGACAAGACAACCGGTACTATCAAGGAGCAACTAGAAGCAATATCACCT
genomic: AGCTTTCTAGACTCCTTTGTGCACTAGGCGAGCTGTCTATTTCTGGCATTgtaagtatct ... acttttgcagCCTGACAAGACAACCGGTACTATCAAGGAGCAACTAGAAGCAATATCACCT
gtacacacacacctacaatatgctgcatctggctcattactgctgacttttgcagCCTGACAAGACAACCGGTACTATCAAGGAGCAACTAGAAGCAATATCACCTTTCTTGGAGAAACTCTGCAGGGAAAAAGATAAGAGGGTTAGAGAGTTTG
tgctgac putative branch site (score: 12)
cttttgc CT-rich tract
tacaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatcttgataaatattttcatgaatataattccttattttccccaaaagtacacacacacctacaatatgctgcatctggctcattactgctgacttttgcagCCTGACAAGACAACCGGTACTATCAAGGAGCAACTAGAAGCAATATCACCTTTCTTGGAGAAACTCTGCAGGGAAAAAGATAAGAGGGTTAGAGAGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG