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...gttagttacagtctctgagttattgagatgaatcattaattttgttttcttcttgtgcttatcgtattccttacaagctctttctcttaactcaatgcagTGGATGCAGAGCGGATGCAAATGAAGCAGCTGTCATACTTCTCCCTTCAAATATCACCCTCTTTACACTTGACTTTGCAGGGTCAGGGCTATCAGGTGGA
species | Oryza sativa |
transcript | LOC_Os06g40730.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCCCAGACAATACTGCCCTTCCTTGTGTGATCTACTGCCATGGAAATAG TGGATGCAGAGCGGATGCAAATGAAGCAGCTGTCATACTTCTCCCTTCAAAEST: gi|33676219|gb|CF304458.1|CF304458
genomic: ATCCCAGACAATACTGCCCTTCCTTGTGTGATCTACTGCCATGGAAATAGgtatttatca ... ctcaatgcagTGGATGCAGAGCGGATGCAAATGAAGCAGCTGTCATACTTCTCCCTTCAAA
EST: ATCCCAGACAATACTGCCCTTCCTTGTGTGATCTACTGCCATGGAAATAG TGGATGCAGAGCGGATGCAAATGAAGCAGCTGTCATACTTCTCCCTTCAAAEST: gi|29680364|gb|CB676639.1|CB676639
genomic: ATCCCAGACAATACTGCCCTTCCTTGTGTGATCTACTGCCATGGAAATAGgtatttatca ... ctcaatgcagTGGATGCAGAGCGGATGCAAATGAAGCAGCTGTCATACTTCTCCCTTCAAA
EST: ATCCCAGACAATACTGCCCTTCCTTGTGTGATCTACTGCCATGGAAATAG TGGATGCAGAGCGGATGCAAATGAAGCAGCTGTCATACTTCTCCCTTCAAAEST: gi|58671343|gb|CK060029.1|CK060029
genomic: ATCCCAGACAATACTGCCCTTCCTTGTGTGATCTACTGCCATGGAAATAGgtatttatca ... ctcaatgcagTGGATGCAGAGCGGATGCAAATGAAGCAGCTGTCATACTTCTCCCTTCAAA
EST: ATCCCAGACAATACTGCCCTTCCTTGTGTGATCTACTGCCATGGAAATAG TGGATGCAGAGCGGATGCAAATGAAGCAGCTGTCATACTTCTCCCTTCAAAEST: gi|58653936|gb|CK042616.1|CK042616
genomic: ATCCCAGACAATACTGCCCTTCCTTGTGTGATCTACTGCCATGGAAATAGgtatttatca ... ctcaatgcagTGGATGCAGAGCGGATGCAAATGAAGCAGCTGTCATACTTCTCCCTTCAAA
EST: GCCATGGAAATAG TGGATGCAGAGCGGATGCAAATGAAGCAGCGGTCATACTTCTCCCTTCAAAEST: gi|58668348|gb|CK057034.1|CK057034
genomic: GCCATGGAAATAGgtatttatca ... ctcaatgcagTGGATGCAGAGCGGATGCAAATGAAGCAGCTGTCATACTTCTCCCTTCAAA
EST: ATCCCAGACAATACTGCCCTTCCTTGTGTGATCTACTGCCATGGAAATAG TGGATGCAGAGCGGATGCAAATGAAGCAGCTGTCATACTTCTCCCTTCAAAEST: gi|58668855|gb|CK057541.1|CK057541
genomic: ATCCCAGACAATACTGCCCTTCCTTGTGTGATCTACTGCCATGGAAATAGgtatttatca ... ctcaatgcagTGGATGCAGAGCGGATGCAAATGAAGCAGCTGTCATACTTCTCCCTTCAAA
EST: ATCCCAGACAATACTGCCCTTCCTTGTGTGATCTACTGCCATGGAAATAG TGGATGCAGAGCGGATGCAAATGAAGCAGCTGTCATACTTCTCCCTTCAAAEST: gi|24208835|gb|AU225862.1|AU225862
genomic: ATCCCAGACAATACTGCCCTTCCTTGTGTGATCTACTGCCATGGAAATAGgtatttatca ... ctcaatgcagTGGATGCAGAGCGGATGCAAATGAAGCAGCTGTCATACTTCTCCCTTCAAA
EST: ATCCCAGACAATACTGCCCTTCCTTGTGTGATCTACTGCCATGGAAATAG TGGATGCAGAGCGGATGCAAATGAAGCAGCTGTCATACTTCTCCCTTCAAA
genomic: ATCCCAGACAATACTGCCCTTCCTTGTGTGATCTACTGCCATGGAAATAGgtatttatca ... ctcaatgcagTGGATGCAGAGCGGATGCAAATGAAGCAGCTGTCATACTTCTCCCTTCAAA
tttcttcttgtgcttatcgtattccttacaagctctttctcttaactcaatgcagTGGATGCAGAGCGGATGCAAATGAAGCAGCTGTCATACTTCTCCCTTCAAATATCACCCTCTTTACACTTGACTTTGCAGGGTCAGGGCTATCAGGTGGA
tcttaac putative branch site (score: 17)
ctctttctcttaactc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttacagtctctgagttattgagatgaatcattaattttgttttcttcttgtgcttatcgtattccttacaagctctttctcttaactcaatgcagTGGATGCAGAGCGGATGCAAATGAAGCAGCTGTCATACTTCTCCCTTCAAATATCACCCTCTTTACACTTGACTTTGCAGGGTCAGGGCTATCAGGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - gatgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagctc