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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttgtaagatgcccagtggcatgcccatattgattatggatgtagtttcgaaagtgagaggaaggattttcgcttagttacatctatgtgtctcgtgcagCAAGATGAAGACCAAGAGGATCCTGATGAAAGGCACCATGCTGATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAG

Basic information

species Oryza sativa
transcript LOC_Os06g38470.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g38470.3 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G081474_T01 (Zea mays), 3'ss of exon 3
--gttgtaagatgcccagtggcatgcccatattg-attatggatgtagtttcgaaagtgagaggaaggattttcgcttagttacatctatgtgtctcgtgcagCAAGATGAAGACCAAGAGGATCCTGATGAAAGGCACCATGCTGATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAG--------
    ||   |   |  |||       |||    | ||| || || |  |     || | ||   |   ||| | ||| | ||  ||  |||  | | ||  |||||||||||||| ||||| ||||||||||||| ||  ||||||||||||||||||| ||| |||||| |||||||||| | ||||| |||||        
tccatggctgccactaagtctatgatccaaggagtattttgtatctcataa-ataattaagtcaacatattgtggctaatttttattcatg--tttggtatagCAAGATGAAGACAAAGAGAATCCTGATGAAAGACATGATGCTGATTCTGATGTGGAGATGAATGATGCCAAACCTTTGCAGGACTCTGGAAGGTATTTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163920649|gb|EG709991.1|EG709991
EST:     CTCCTAGCGTCCAATTTCAAGAGCGACCCCCTGAGGCTGAGCTACCTGAG                         CAAGATGAAGACCAAGAGGATCCTGATGAAAGGCATCATGCTGATTCTGAT
genomic: CTCCTAGCGTCCAATTTCAAGAGCGACCCCCTGAGGCTGAGCTACCTGAGgtgagtgaga ... tctcgtgcagCAAGATGAAGACCAAGAGGATCCTGATGAAAGGCACCATGCTGATTCTGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcgaaagtgagaggaaggattttcgcttagttacatctatgtgtctcgtgcagCAAGATGAAGACCAAGAGGATCCTGATGAAAGGCACCATGCTGATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAG
                            ttagtta  TA-rich tract