1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgcgaatgtaatttataattagatttgtccaataaagtgaatcagggagacagggactaatcattctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCGCGCGCTATG
species | Oryza sativa |
transcript | LOC_Os06g37440.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGTCTCAGACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAG ATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCEST: gi|88300178|gb|CI582412.1|CI582412
genomic: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAGgtatgcgaat ... ttctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
EST: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAG ATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCEST: gi|58692670|gb|CK081357.1|CK081357
genomic: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAGgtatgcgaat ... ttctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
EST: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAG ATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCEST: gi|88393909|gb|CI684174.1|CI684174
genomic: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAGgtatgcgaat ... ttctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
EST: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAG ATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCEST: gi|29642157|gb|CB647164.1|CB647164
genomic: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAGgtatgcgaat ... ttctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
EST: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAG ATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCEST: gi|88299640|gb|CI574753.1|CI574753
genomic: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAGgtatgcgaat ... ttctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
EST: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAG ATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCEST: gi|33797048|gb|CF324390.1|CF324390
genomic: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAGgtatgcgaat ... ttctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
EST: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAG ATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCEST: gi|66917477|gb|CX104325.1|CX104325
genomic: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAGgtatgcgaat ... ttctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
EST: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAG ATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCEST: gi|88340432|gb|CI659638.1|CI659638
genomic: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAGgtatgcgaat ... ttctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
EST: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAG ATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCEST: gi|88325683|gb|CI648126.1|CI648126
genomic: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAGgtatgcgaat ... ttctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
EST: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAG ATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCEST: gi|88392537|gb|CI625359.1|CI625359
genomic: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAGgtatgcgaat ... ttctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
EST: GTGTTTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAG ATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCEST: gi|88402181|gb|CI615024.1|CI615024
genomic: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAGgtatgcgaat ... ttctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
EST: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAG ATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCEST: gi|218502040|gb|FG964259.1|FG964259
genomic: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAGgtatgcgaat ... ttctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
EST: CTCAAGATGAACCCCCTTGGGAAG ATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCEST: gi|58677886|gb|CK066573.1|CK066573
genomic: CTCAAGATGAACCCCCTTGGGAAGgtatgcgaat ... ttctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
EST: TGTCTCAAACAAGACCCCTGAGTTTCGTCAAGATGAACCCCCTTGGGAAG ATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCEST: gi|88403316|gb|CI573039.1|CI573039
genomic: TGTCTCAAACAAGACCCCTGAGTTTC-TCAAGATGAACCCCCTTGGGAAGgtatgcgaat ... ttctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
EST: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAG ATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCEST: gi|58589520|gb|CF987828.1|CF987828
genomic: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAGgtatgcgaat ... ttctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
EST: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAG ATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTATTTGAGAGCAATGCTATCEST: gi|88421445|gb|CI618569.1|CI618569
genomic: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAGgtatgcgaat ... ttctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
EST: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAG ATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCEST: gi|33796831|gb|CF324280.1|CF324280
genomic: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAGgtatgcgaat ... ttctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
EST: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAG ATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCEST: gi|88432577|gb|CI567616.1|CI567616
genomic: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAGgtatgcgaat ... ttctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
EST: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAG ATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCEST: gi|33658387|gb|CF281000.1|CF281000
genomic: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAGgtatgcgaat ... ttctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
EST: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAG ATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCEST: gi|218485368|gb|FG956297.1|FG956297
genomic: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAGgtatgcgaat ... ttctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
EST: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAG ATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCEST: gi|33794630|gb|CF323201.1|CF323201
genomic: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAGgtatgcgaat ... ttctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
EST: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAG ATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCEST: gi|58682402|gb|CK071089.1|CK071089
genomic: GTGTCTCAAACAAGACCCCTGAGTTTCTCAAGATGAACCCCCTTGGGAAGgtatgcgaat ... ttctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
EST: GTTTCTCAAGATGAACCCCC-TGGGAAG A-TCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
genomic: GTTTCTCAAGATGAACCCCCTTGGGAAGgtatgcgaat ... ttctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATC
ttagatttgtccaataaagtgaatcagggagacagggactaatcattctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCGCGCGCTATG
gactaat putative branch site (score: 87)
tcattcttt CT-rich tract
aataaagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcgaatgtaatttataattagatttgtccaataaagtgaatcagggagacagggactaatcattctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCGCGCGCTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA