1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgctataaattttcaccttgttatttctaatcagctatctagccagctgatatattgtactatatgttcagcagatacattcaaaatacagcaactgaacttttttccctcttaataacctttttttctcagGATTTTGGATAATCTCCCAGTTGTGGTGCCTAGACAAACAAGGGAAGGAAGCCAAACACCAAGCTTTGAGCATGGTTACCGAGTTGGTTATAAG
species | Oryza sativa |
transcript | LOC_Os06g37160.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTGCAAAGAATTTCAAAGAAAAGATTGACGATGAGTATCGAGTGAACAT GATTTTGGATAATCTCCCAGTTGTGGTGCCTAGACAAACAAGGGAAGGAAGEST: gi|58670643|gb|CK059329.1|CK059329
genomic: GCTGCAAAGAATTTCAAAGAAAAGATTGACGATGAGTATCGAGTGAACATgtatgctata ... tttttctcagGATTTTGGATAATCTCCCAGTTGTGGTGCCTAGACAAACAAGGGAAGGAAG
EST: GCTGCAAAGAATTTCAAAGAAAAGATTGACGATGAGTATCGAGTGAACAT GATTTTGGATAATCTCCCAGTTGTGGTGCCTAGACAAACAAGGGAAGGAAGEST: gi|58664351|gb|CK053037.1|CK053037
genomic: GCTGCAAAGAATTTCAAAGAAAAGATTGACGATGAGTATCGAGTGAACATgtatgctata ... tttttctcagGATTTTGGATAATCTCCCAGTTGTGGTGCCTAGACAAACAAGGGAAGGAAG
EST: GCTGCAAAGAATTTCAAAGAAAAGATTGACGATGAGTATCGAGTGAACAT GATTTTGGATAATCTCCCAGTTGTGGTGCCTAGACAAACAAGGGAAGGAAGEST: gi|58668256|gb|CK056942.1|CK056942
genomic: GCTGCAAAGAATTTCAAAGAAAAGATTGACGATGAGTATCGAGTGAACATgtatgctata ... tttttctcagGATTTTGGATAATCTCCCAGTTGTGGTGCCTAGACAAACAAGGGAAGGAAG
EST: GCTGCAAAGAATTTCAAAGAAAAGATTGACGATGAGTATCGAGTGAACAT GATTTTGGATAATCTCCCAGTTGTGGTGCCTAGACAAACAAGGGAAGGAAG
genomic: GCTGCAAAGAATTTCAAAGAAAAGATTGACGATGAGTATCGAGTGAACATgtatgctata ... tttttctcagGATTTTGGATAATCTCCCAGTTGTGGTGCCTAGACAAACAAGGGAAGGAAG
cattcaaaatacagcaactgaacttttttccctcttaataacctttttttctcagGATTTTGGATAATCTCCCAGTTGTGGTGCCTAGACAAACAAGGGAAGGAAGCCAAACACCAAGCTTTGAGCATGGTTACCGAGTTGGTTATAAG
taataac putative branch site (score: 31)
cttttttccctcttaa CT-rich tract
ttaataaccttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctataaattttcaccttgttatttctaatcagctatctagccagctgatatattgtactatatgttcagcagatacattcaaaatacagcaactgaacttttttccctcttaataacctttttttctcagGATTTTGGATAATCTCCCAGTTGTGGTGCCTAGACAAACAAGGGAAGGAAGCCAAACACCAAGCTTTGAGCATGGTTACCGAGTTGGTTATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT