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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtaccaagtatcaacccagcattttgagcatttatgttaacaatattgcaatagtatttaggtagcttcaacttcagtcttcagtgcgtgacctaacttcgtgttatctgctaattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTGCAGTCTTGATGTGTTCATTATCAAAACCTTGCTTTGTTTAGAGCTGTCT

Basic information

species Oryza sativa
transcript LOC_Os06g36160.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88486338|gb|CI423609.1|CI423609
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88843427|gb|CI372327.1|CI372327
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCCTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88501878|gb|CI429384.1|CI429384
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCNTGGTGTGAAGAAG                         ACAAAGGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTT
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAA-GGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTT
EST: gi|88265890|gb|CI376792.1|CI376792
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88240823|gb|CI238674.1|CI238674
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88204674|gb|CI204523.1|CI204523
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|15850357|gb|BI798633.1|BI798633
EST:     AGATGAAGGAACGGAAGAACAGAGCAA-GAAGATCCGTGGTGTGAAGAAG                         ACCAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGA--TGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88848323|gb|CI086845.1|CI086845
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|4714308|gb|AU058275.1|AU058275
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|8527927|gb|AU092742.1|AU092742
EST:     AGATGAAGGAACGGAAGANCAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|3767256|gb|AU031366.1|AU031366
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGANCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88366065|gb|CI548312.1|CI548312
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88254045|gb|CI352671.1|CI352671
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|86863852|gb|CI332854.1|CI332854
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|89170709|gb|CI039986.1|CI039986
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACCAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88209028|gb|CI208877.1|CI208877
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|3106802|gb|D42527.1|D42527
EST:     AAAGAAGATCCGTGGTGTGNAGAAG                         ACAAAGGCTGGAGATGCTGGNNAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88481214|gb|CI418485.1|CI418485
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAN                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88546275|gb|CI475895.1|CI475895
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88526630|gb|CI454706.1|CI454706
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88520551|gb|CI448205.1|CI448205
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|86522355|gb|CI162561.1|CI162561
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88320321|gb|CI523064.1|CI523064
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88527329|gb|CI455476.1|CI455476
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88550462|gb|CI478439.1|CI478439
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88219151|gb|CI220424.1|CI220424
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|89186230|gb|CI262062.1|CI262062
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|86493081|gb|CI135714.1|CI135714
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88980167|gb|CI026456.1|CI026456
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|8594842|gb|AU093380.1|AU093380
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88519381|gb|CI447035.1|CI447035
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88239271|gb|CI240433.1|CI240433
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88212728|gb|CI212368.1|CI212368
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88441608|gb|CI554832.1|CI554832
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88974571|gb|CI022112.1|CI022112
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|86251371|gb|CI055504.1|CI055504
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88208636|gb|CI208485.1|CI208485
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88903251|gb|CI088789.1|CI088789
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88238593|gb|CI238442.1|CI238442
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         GCAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88382206|gb|CI533410.1|CI533410
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTCAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88456609|gb|CI547325.1|CI547325
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88481525|gb|CI418796.1|CI418796
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|89196939|gb|CI021779.1|CI021779
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88963510|gb|CI029310.1|CI029310
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88481340|gb|CI418611.1|CI418611
EST:     AGATGAAGGGACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88243696|gb|CI242818.1|CI242818
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|86595148|gb|CI260387.1|CI260387
EST:     AGATGAAGGAACGGAAGAGCAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88482135|gb|CI419406.1|CI419406
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|30229440|gb|CB967331.1|CB967331
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88250996|gb|CI349226.1|CI349226
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|86859457|gb|CI278864.1|CI278864
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|86529974|gb|CI170180.1|CI170180
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|58653510|gb|CK042190.1|CK042190
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGT--GAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|87025919|gb|CI282496.1|CI282496
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|38468332|gb|CF952463.1|CF952463
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGA--TGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|8335108|gb|BE040092.1|BE040092
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGA--TGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88471339|gb|CI408610.1|CI408610
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88546309|gb|CI475935.1|CI475935
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
EST: gi|88286602|gb|CI517713.1|CI517713
EST:     AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG                         ACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG
genomic: AGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 75 (downstream exon)
Score: 207

AATGGTCTTGCCACTAAGGTAGAGAAGTCACGTAAGCAGATGAAGGAACGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAGgtcagtacca ... aattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTGCAGTCTTGATGTGTTCATTATCAAAACCTTGCTTTGTTTAGAGCTGTCT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaacttcagtcttcagtgcgtgacctaacttcgtgttatctgctaattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTGCAGTCTTGATGTGTTCATTATCAAAACCTTGCTTTGTTTAGAGCTGTCT
                                         tgctaat  putative branch site (score: 207)
                                            taattttgta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcagtaccaagtatcaacccagcattttgagcatttatgttaacaatattgcaatagtatttaggtagcttcaacttcagtcttcagtgcgtgacctaacttcgtgttatctgctaattttgtagACAAAGGCTGGAGATGCTGGGAAGAAGAAGTGAGAGATGATACTCATCTTGCAGTCTTGATGTGTTCATTATCAAAACCTTGCTTTGTTTAGAGCTGTCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT