1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagttgggatatattctactttgactttcacacagttccacgcatgtttagactccatttttttctgattgatagacccatattttcagcatttatttatctttgaattttttttaagcatctctttggtagtttgcattctttatacgtgcttagctcatgaaattcttcagCCATCACAATATTTGGAGGGATGCCCAAGTACCACAAAAGACATTTACCTATTACCATCCAGAGTCAAGAGGACTTGACTTTGCAGGCCTAATGGATGAT
species | Oryza sativa |
transcript | LOC_Os06g35540.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGTTTCTTGCCAGATTCACAGATTTATATACCCACACCTACATGGGCCAA CCATCACAATATTTGGAGGGATGCCCAAGTACCACAAAAGACATTTACCTAEST: gi|58607841|gb|CK035874.1|CK035874
genomic: CGTTTCTTGCCAGATTCACAGATTTATATACCCACACCTACATGGGCCAAgtaagttggg ... aattcttcagCCATCACAATATTTGGAGGGATGCCCAAGTACCACAAAAGACATTTACCTA
EST: CGTTTCTTGCCAGATTCACAGATTTATATACCCACACCTACATGGGCCAA CCATCACAATATTTGGAGGGATGCCCAAGTACCACAAAAGACATTTACCTA
genomic: CGTTTCTTGCCAGATTCACAGATTTATATACCCACACCTACATGGGCCAAgtaagttggg ... aattcttcagCCATCACAATATTTGGAGGGATGCCCAAGTACCACAAAAGACATTTACCTA
catctctttggtagtttgcattctttatacgtgcttagctcatgaaattcttcagCCATCACAATATTTGGAGGGATGCCCAAGTACCACAAAAGACATTTACCTATTACCATCCAGAGTCAAGAGGACTTGACTTTGCAGGCCTAATGGATGAT
ttcttc CT-rich tract
attctttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgggatatattctactttgactttcacacagttccacgcatgtttagactccatttttttctgattgatagacccatattttcagcatttatttatctttgaattttttttaagcatctctttggtagtttgcattctttatacgtgcttagctcatgaaattcttcagCCATCACAATATTTGGAGGGATGCCCAAGTACCACAAAAGACATTTACCTATTACCATCCAGAGTCAAGAGGACTTGACTTTGCAGGCCTAATGGATGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA