1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttagagatatcttcctgatgttctcaccatgattctggattacataactttatcgtattagtcttgtgcatgtgcatgcagGCAAAATGCCTTGAGACTGGTGAAACTGTTGCCATTAAGAAGGTCTTACAGGACAAACGATACAAGAACAGAGAGTTACAGATAATGCGATCAATGGATC
species | Oryza sativa |
transcript | LOC_Os06g35530.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATATGGCTGAACGAGTTGTTGGAACTGGATCCTTTGGTGTTGTATTCCAG GCAAAATGCCTTGAGACTGGTAAAACTGTTGCCATTAAGAAGGTCTTACAGEST: gi|33793859|gb|CF322817.1|CF322817
genomic: ATATGGCTGAACGAGTTGTTGGAACTGGATCCTTTGGTGTTGTATTCCAGgttagagata ... gtgcatgcagGCAAAATGCCTTGAGACTGGTGAAACTGTTGCCATTAAGAAGGTCTTACAG
EST: ATATGGCTGAACGAGTTGTTGGAACTGGATCCTTTGGTGTTGTATTCCAG GCAAAATGCCTTGAGACTGGTGAAACTGTTGCCATTAAGAAGGTCTTACAGEST: gi|58608373|gb|CK036406.1|CK036406
genomic: ATATGGCTGAACGAGTTGTTGGAACTGGATCCTTTGGTGTTGTATTCCAGgttagagata ... gtgcatgcagGCAAAATGCCTTGAGACTGGTGAAACTGTTGCCATTAAGAAGGTCTTACAG
EST: ATATGGCTGAACGAGTTGTTGGAACTGGATCCTTTGGTGTTGTATTCCAG GCAAAATGCCTTGAGACTGGTGAAACTGTTGCCATTAAGAAGGTCTTACAGEST: gi|29672896|gb|CB669171.1|CB669171
genomic: ATATGGCTGAACGAGTTGTTGGAACTGGATCCTTTGGTGTTGTATTCCAGgttagagata ... gtgcatgcagGCAAAATGCCTTGAGACTGGTGAAACTGTTGCCATTAAGAAGGTCTTACAG
EST: ATATGGCTGAACGAGTTGTTGGAACTGGATCCTTTGGTGTTGTATTCCAG GCAAAATGCCTTGAGACTGGTGAAACTGTTGCCATTAAGAAGGTCTTACAGEST: gi|33676536|gb|CF304775.1|CF304775
genomic: ATATGGCTGAACGAGTTGTTGGAACTGGATCCTTTGGTGTTGTATTCCAGgttagagata ... gtgcatgcagGCAAAATGCCTTGAGACTGGTGAAACTGTTGCCATTAAGAAGGTCTTACAG
EST: ATATGGCTGAACGAGTTGTTGGAACTGGATCCTTTGGTGTTGTATTCCAG GCAAAATGCCTTGAGACTGGTGAAACTGTTGCCATTAAGAAGGTCTTACAGEST: gi|58653237|gb|CK041917.1|CK041917
genomic: ATATGGCTGAACGAGTTGTTGGAACTGGATCCTTTGGTGTTGTATTCCAGgttagagata ... gtgcatgcagGCAAAATGCCTTGAGACTGGTGAAACTGTTGCCATTAAGAAGGTCTTACAG
EST: ATATGGCTGAACGAGTTGTTGGAACTGGATCCTTTGGTGTTGTATTCCAG GCAAAATGCCTTGAGACTGGTAAAACTGTTGCCATTAAGAAGGTCTTACAGEST: gi|29689142|gb|CB685417.1|CB685417
genomic: ATATGGCTGAACGAGTTGTTGGAACTGGATCCTTTGGTGTTGTATTCCAGgttagagata ... gtgcatgcagGCAAAATGCCTTGAGACTGGTGAAACTGTTGCCATTAAGAAGGTCTTACAG
EST: ATATGGCTGAACGAGTTGTTGGAACTGGATCCTTTGGTGTTGTATTCCAG GCAAAATGCCTTGAGACTGGTGAAACTGTTGCCATTAAGAAGGTCTTACAGEST: gi|29660849|gb|CB657124.1|CB657124
genomic: ATATGGCTGAACGAGTTGTTGGAACTGGATCCTTTGGTGTTGTATTCCAGgttagagata ... gtgcatgcagGCAAAATGCCTTGAGACTGGTGAAACTGTTGCCATTAAGAAGGTCTTACAG
EST: ATATGGCTGAACGAGTTGTTGGAACTGGATCCTTTGGTGTTGTATTCCAG GCAAAATGCCTTGAGACTGGTGAAACTGTTGCCATTAAGAAGGTCTTACAG
genomic: ATATGGCTGAACGAGTTGTTGGAACTGGATCCTTTGGTGTTGTATTCCAGgttagagata ... gtgcatgcagGCAAAATGCCTTGAGACTGGTGAAACTGTTGCCATTAAGAAGGTCTTACAG
ccatgattctggattacataactttatcgtattagtcttgtgcatgtgcatgcagGCAAAATGCCTTGAGACTGGTGAAACTGTTGCCATTAAGAAGGTCTTACAGGACAAACGATACAAGAACAGAGAGTTACAGATAATGCGATCAATGGATC
acataac putative branch site (score: 41)
attacataactttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagagatatcttcctgatgttctcaccatgattctggattacataactttatcgtattagtcttgtgcatgtgcatgcagGCAAAATGCCTTGAGACTGGTGAAACTGTTGCCATTAAGAAGGTCTTACAGGACAAACGATACAAGAACAGAGAGTTACAGATAATGCGATCAATGGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC