1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtctataaaagttctctcttctttacaaaagcacatgttgaattattctacctctttgagcctgtcaagaatattactgatgttttgtttttatacacagGAGAAGCTCATTCTCTGAAAGTAGAGAATATTCTGTATCAAGGGAAATCACCATACCAAGAAATCTTAGTTTTTGAG
species | Oryza sativa |
transcript | LOC_Os06g33710.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTAAAACAAGCAAAGTGCAGTACTTCAACAATCCAATGTGGCCTG GAGAAGCTCATTCTCTGAAAGTAGAGAATATTCTGTATCAAGGGAAATCACEST: gi|29678039|gb|CB674314.1|CB674314
genomic: GTAAAACAAGCAAAGTGCAGTACTTCAACAATCCAATGTGGCCTGgtatttctct ... ttatacacagGAGAAGCTCATTCTCTGAAAGTAGAGAATATTCTGTATCAAGGGAAATCAC
EST: GTAAAACAAGCAAAGTGCAGTACTTCAACAATCCAATGTGGCCTG GAGAAGCTCATTCTCTGAAAGTAGAGAATATTCTGTATCAAGGGAAATCACEST: gi|29661773|gb|CB658048.1|CB658048
genomic: GTAAAACAAGCAAAGTGCAGTACTTCAACAATCCAATGTGGCCTGgtatttctct ... ttatacacagGAGAAGCTCATTCTCTGAAAGTAGAGAATATTCTGTATCAAGGGAAATCAC
EST: GTAAAACAAGCAAAGTGCAGTACTTCAACAATCCAATGTGGCCTG GAGAAGCTCATTCTCTGAAAGTAGAGAATATTCTGTATCAAGGGAAATCACEST: gi|29674257|gb|CB670532.1|CB670532
genomic: GTAAAACAAGCAAAGTGCAGTACTTCAACAATCCAATGTGGCCTGgtatttctct ... ttatacacagGAGAAGCTCATTCTCTGAAAGTAGAGAATATTCTGTATCAAGGGAAATCAC
EST: GTAAAACAAGCAAAGTGCAGTACTTCAACAATCCAATGTGGCCTG GAGAAGCTCATTCTCTGAAAGTAGAGAATATTCTGTATCAAGGGAAATCACEST: gi|58690531|gb|CK079218.1|CK079218
genomic: GTAAAACAAGCAAAGTGCAGTACTTCAACAATCCAATGTGGCCTGgtatttctct ... ttatacacagGAGAAGCTCATTCTCTGAAAGTAGAGAATATTCTGTATCAAGGGAAATCAC
EST: CTCTGGTAAAACAAGCAAAGTGCAGTACTTCAACAATCCAATGTGGCCTG GAGAAGCTCATTCTCTGAAAGTAGAGAATATTCTGTATCAAGGGAAATCACEST: gi|29660327|gb|CB656602.1|CB656602
genomic: CTCTGGTAAAACAAGCAAAGTGCAGTACTTCAACAATCCAATGTGGCCTGgtatttctct ... ttatacacagGAGAAGCTCATTCTCTGAAAGTAGAGAATATTCTGTATCAAGGGAAATCAC
EST: GTAAAACAAGCAAAGTGCAGTACTTCAACAATCCAATGTGGCCTG GAGAAGCTCATTCTCTGAAAGTAGAGAATATTCTGTATCAAGGGAAATCAC
genomic: GTAAAACAAGCAAAGTGCAGTACTTCAACAATCCAATGTGGCCTGgtatttctct ... ttatacacagGAGAAGCTCATTCTCTGAAAGTAGAGAATATTCTGTATCAAGGGAAATCAC
ttctacctctttgagcctgtcaagaatattactgatgttttgtttttatacacagGAGAAGCTCATTCTCTGAAAGTAGAGAATATTCTGTATCAAGGGAAATCACCATACCAAGAAATCTTAGTTTTTGAG
tactgat putative branch site (score: 2)
ttttgttttt CT-rich tract
atgttttgtttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctataaaagttctctcttctttacaaaagcacatgttgaattattctacctctttgagcctgtcaagaatattactgatgttttgtttttatacacagGAGAAGCTCATTCTCTGAAAGTAGAGAATATTCTGTATCAAGGGAAATCACCATACCAAGAAATCTTAGTTTTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA