1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gcccttttctgaaatatccaagctgatatatttcgtgaggagtgatttatgtttaatactattatgtccctgaatattcgaggaatgtttactattgcagGTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGGGTCAAGCTGTTTCTACAAG
species | Oryza sativa |
transcript | LOC_Os06g21390.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCGAACTCAA GTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGGEST: gi|86505760|gb|CI148393.1|CI148393
genomic: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAAgtaagtttga ... actattgcagGTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGG
EST: AGATTATTGACAACTATAAAGCCAAACTCAA GTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGGEST: gi|88230758|gb|CI230634.1|CI230634
genomic: AGATTATTGACAACTATAAAGCCAAACTCAAgtaagtttga ... actattgcagGTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGG
EST: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCCAACTCAA GTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGGEST: gi|86492751|gb|CI135384.1|CI135384
genomic: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAAgtaagtttga ... actattgcagGTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGG
EST: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAA GTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGGEST: gi|218487594|gb|FG945523.1|FG945523
genomic: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAAgtaagtttga ... actattgcagGTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGG
EST: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAA GTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGG
genomic: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAAgtaagtttga ... actattgcagGTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGG
tttatgtttaatactattatgtccctgaatattcgaggaatgtttactattgcagGTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGGGTCAAGCTGTTTCTACAAG
gtttaat putative branch site (score: 4)
tttaatactattatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcccttttctgaaatatccaagctgatatatttcgtgaggagtgatttatgtttaatactattatgtccctgaatattcgaggaatgtttactattgcagGTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGGGTCAAGCTGTTTCTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT