1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...actgtacgaaaaatcggtgtcgacattttacttatcaattgacgcatttgagatcaccagattctgatgtatcttgtaaaaaatggatcaaacattacagATAGCAGACCGAAGCTTGTTGCTGGTTCGCCGGAAGGATTATCCGGCCATGTCGACGGGAGGCTGCGGGAGGCGAAGATGAACCATCCGAAGGGATTTAC
species | Oryza sativa |
transcript | LOC_Os06g15820.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGACTCCATGAACAGCAACGTCTACAGGGTCCAGCTGCCTCTGTCGCGAT ATAGCAGACCGAAGCTTGTTGCTGGTTCGCCGGAAGGATTATCCGGCCATGEST: gi|58671968|gb|CK060654.1|CK060654
genomic: CGACTCCATGAACAGCAACGTCTACAGGGTCCAGCTGCCTCTGTCGCGATgtgagcattg ... aacattacagATAGCAGACCGAAGCTTGTTGCTGGTTCGCCGGAAGGATTATCCGGCCATG
EST: GCTGCCTCTGTCGCGAT ATAGCAGACCGAAGCTTGTTGCTGGTTCGCCGGAAGGATTATCCGGCCATGEST: gi|58671025|gb|CK059711.1|CK059711
genomic: GCTGCCTCTGTCGCGATgtgagcattg ... aacattacagATAGCAGACCGAAGCTTGTTGCTGGTTCGCCGGAAGGATTATCCGGCCATG
EST: CGACTCCATGAACAGCAACGTCTACAGGGTCCAGCTGCCTCTGTCGCGAT ATAGCAGACCGAAGCTTGTTGCTGGTTCGCCGGAAGGATTATCCGGCCATG
genomic: CGACTCCATGAACAGCAACGTCTACAGGGTCCAGCTGCCTCTGTCGCGATgtgagcattg ... aacattacagATAGCAGACCGAAGCTTGTTGCTGGTTCGCCGGAAGGATTATCCGGCCATG
atttgagatcaccagattctgatgtatcttgtaaaaaatggatcaaacattacagATAGCAGACCGAAGCTTGTTGCTGGTTCGCCGGAAGGATTATCCGGCCATGTCGACGGGAGGCTGCGGGAGGCGAAGATGAACCATCCGAAGGGATTTAC
ttctgat putative branch site (score: 10)
tatcttgtaaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgtacgaaaaatcggtgtcgacattttacttatcaattgacgcatttgagatcaccagattctgatgtatcttgtaaaaaatggatcaaacattacagATAGCAGACCGAAGCTTGTTGCTGGTTCGCCGGAAGGATTATCCGGCCATGTCGACGGGAGGCTGCGGGAGGCGAAGATGAACCATCCGAAGGGATTTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
-ctgtacg
- - - - - - - - - - - - - - - - - - - - - -gcatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - caccaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat