1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaatgaatttacaaaccgattcatacacggatgacgtaccaaaataccggcaaaaacatctttaatttttataatagtagagatttgttttcgaatttagCTTTTGTAGGTGGCTGATGAATTATGAAAATTGTGTTCAGAGGCGCGATAAAGATCAAGGGGAGCATAAGCGCGGCGCAGAAGTTCACCCCGGATATCTT
species | Oryza sativa |
transcript | LOC_Os06g10890.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
accggcaaaaacatctttaatttttataatagtagagatttgttttcgaatttagCTTTTGTAGGTGGCTGATGAATTATGAAAATTGTGTTCAGAGGCGCGATAAAGATCAAGGGGAGCATAAGCGCGGCGCAGAAGTTCACCCCGGATATCTT
ctttaat putative branch site (score: 4)
tttgttttc putative PPT
aaaaacatctttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatgaatttacaaaccgattcatacacggatgacgtaccaaaataccggcaaaaacatctttaatttttataatagtagagatttgttttcgaatttagCTTTTGTAGGTGGCTGATGAATTATGAAAATTGTGTTCAGAGGCGCGATAAAGATCAAGGGGAGCATAAGCGCGGCGCAGAAGTTCACCCCGGATATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - aaaccga
- - - - - - - - - - -catacac
- - - - - - - - - - - - - - - - - - -accaaaa
- - - - - - - - - - - - - - - - - - - - - - -accggca