1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agatagtacattttactagatgctttgcaatgttgagaaagttctcttcatagattcttctttccctaacaggagttttatctataaatggattttgcagGTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGCCTCCGACGAACACTGACTGGTCCATG
species | Oryza sativa |
transcript | LOC_Os06g10880.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGGAAATGATACAGAAGCAAAATGATGAG GTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGCEST: gi|89185524|gb|CI051852.1|CI051852
genomic: GTGGAAATGATACAGAAGCAAAATGATGAGgtaatgacct ... gattttgcagGTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGC
EST: GTGGAAATGATACAGAAGCCAAATGATGAG GTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGCEST: gi|86493779|gb|CI136412.1|CI136412
genomic: GTGGAAATGATACAGAAGCAAAATGATGAGgtaatgacct ... gattttgcagGTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGC
EST: GTGGAAATGATACAGAAGCAAAATGATGAG GTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGCEST: gi|29656994|gb|CB653269.1|CB653269
genomic: GTGGAAATGATACAGAAGCAAAATGATGAGgtaatgacct ... gattttgcagGTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGC
EST: GTGGAAATGATACAGAAGCAAAATGATGAG GTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGCEST: gi|88833398|gb|CI076879.1|CI076879
genomic: GTGGAAATGATACAGAAGCAAAATGATGAGgtaatgacct ... gattttgcagGTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGC
EST: AAGCAGGTGGAAATGATACAGAAGCAAAATGATGAG GTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGCEST: gi|86414073|gb|CI068280.1|CI068280
genomic: AAGCAGGTGGAAATGATACAGAAGCAAAATGATGAGgtaatgacct ... gattttgcagGTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGC
EST: GTGGAAATGATACAGAAGCAAAATGATGAG GTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGCEST: gi|88520057|gb|CI447711.1|CI447711
genomic: GTGGAAATGATACAGAAGCAAAATGATGAGgtaatgacct ... gattttgcagGTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGC
EST: CAGAAGCCAAATGATGAG GTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGCEST: gi|86492892|gb|CI135525.1|CI135525
genomic: CAGAAGCAAAATGATGAGgtaatgacct ... gattttgcagGTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGC
EST: GTGGAAATGATACAGAAGCAAAATGATGAG GTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGCEST: gi|87028268|gb|CI111962.1|CI111962
genomic: GTGGAAATGATACAGAAGCAAAATGATGAGgtaatgacct ... gattttgcagGTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGC
EST: GTGGAAATGATACAGAAGCAAAATGATGAG GTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGC
genomic: GTGGAAATGATACAGAAGCAAAATGATGAGgtaatgacct ... gattttgcagGTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGC
cttcatagattcttctttccctaacaggagttttatctataaatggattttgcagGTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGCCTCCGACGAACACTGACTGGTCCATG
ccctaac putative branch site (score: 39)
ttttatctataaatgg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatagtacattttactagatgctttgcaatgttgagaaagttctcttcatagattcttctttccctaacaggagttttatctataaatggattttgcagGTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGCCTCCGACGAACACTGACTGGTCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - ctttgca
- - - - - - - - - - - - - - -atgttga