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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agttccactgctctagtgatatatgtagtctgtagttttactatataaatcttttctacctatctctcttcatagtctgacatatactttcgttctgcagCATTCTCACGGGCCTCCTTTCATTCATG

Basic information

species Oryza sativa
transcript LOC_Os06g09330.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87015788|gb|CI279540.1|CI279540
EST:     TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAG                         CATTCTCACGGGCCTCCTTTCATTCATG
genomic: TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAGgtatgtacaa ... cgttctgcagCATTCTCACGGGCCTCCTTTCATTCATG
EST: gi|87010686|gb|CI312378.1|CI312378
EST:     TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAG                         CATTCTCACGGGCCTCCTTTCATTCATG
genomic: TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAGgtatgtacaa ... cgttctgcagCATTCTCACGGGCCTCCTTTCATTCATG
EST: gi|86495662|gb|CI138295.1|CI138295
EST:     TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAG                         CATTCTCACGGGCCTCCTTTCATTCATG
genomic: TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAGgtatgtacaa ... cgttctgcagCATTCTCACGGGCCTCCTTTCATTCATG
EST: gi|86599367|gb|CI251325.1|CI251325
EST:     TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAG                         CATTCTCACGGGCCTCCTTTCATTCATG
genomic: TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAGgtatgtacaa ... cgttctgcagCATTCTCACGGGCCTCCTTTCATTCATG
EST: gi|86514651|gb|CI157284.1|CI157284
EST:     TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAG                         CATTCTCACGGGCCTCCTTTCATTCATG
genomic: TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAGgtatgtacaa ... cgttctgcagCATTCTCACGGGCCTCCTTTCATTCATG
EST: gi|86855623|gb|CI268950.1|CI268950
EST:     ATGTGGTCTGTGGCAAG                         CATTCTCACGGGCCTCCTTTCATTCATG
genomic: ATGTGGTCTGTGGCAAGgtatgtacaa ... cgttctgcagCATTCTCACGGGCCTCCTTTCATTCATG
EST: gi|88206366|gb|CI206215.1|CI206215
EST:     TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAG                         CATTCTCACGGGCCTCCTTTCATTCATG
genomic: TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAGgtatgtacaa ... cgttctgcagCATTCTCACGGGCCTCCTTTCATTCATG
EST: gi|87035120|gb|CI189743.1|CI189743
EST:     AGTGACTTTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAG                         CATTCTCACGGGCCTCCTTTCATTCATG
genomic: AGTGACTTTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAGgtatgtacaa ... cgttctgcagCATTCTCACGGGCCTCCTTTCATTCATG
EST: gi|87035496|gb|CI190118.1|CI190118
EST:     TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAG                         CATTCTCACGGGCCTCCTTTCATTCATG
genomic: TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAGgtatgtacaa ... cgttctgcagCATTCTCACGGGCCTCCTTTCATTCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatcttttctacctatctctcttcatagtctgacatatactttcgttctgcagCATTCTCACGGGCCTCCTTTCATTCATG
                             gtctgac  putative branch site (score: 3)
                                         ctttcgttct  putative PPT
                                    atatacttt  TA-rich tract