1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatgcttgacgttcacctaactgactttttggttttattgcattcaaatgcatactgtcaatattccctgtgcttcctcatgccttctactaataagcgtccttctgcaagGTTGCAAGATGCACAAAGATCATCAGCCCTAACACGGACGATGCTAAATATGTCATCAATGTCAAGCAAATTGCGAAG
species | Oryza sativa |
transcript | LOC_Os06g09290.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGACCTGGTATCCGATAAGCAGATGATGCAGGAGGAGCAACCCCTGCAG GTTGCAAGATGCACAAAGATCATCAGCCCTAACACGGACGATGCTAAATATEST: gi|29666226|gb|CB662501.1|CB662501
genomic: GGGACCTTGTATCCGATAAGCAGATGATGCAGGAGGAGCAACCCCTGCAGgtaatgcttg ... cttctgcaagGTTGCAAGATGCACAAAGATCATCAGCCCTAACACGGACGATGCTAAATAT
EST: GGGACCTTGTATCCGATAAGCAGATGATGCAGGAGGAGCAACCCCTGCAG GTTGCAAGATGCACAAAGATCATCAGCCCTAACACGGACGATGCTAAATATEST: gi|58592633|gb|CF990941.1|CF990941
genomic: GGGACCTTGTATCCGATAAGCAGATGATGCAGGAGGAGCAACCCCTGCAGgtaatgcttg ... cttctgcaagGTTGCAAGATGCACAAAGATCATCAGCCCTAACACGGACGATGCTAAATAT
EST: GGAGCAACCCCTGCAG GTTGCAAGATGCACAAAGATCATCAGCCCTAACACGGACGATGCTAAATAT
genomic: GGAGCAACCCCTGCAGgtaatgcttg ... cttctgcaagGTTGCAAGATGCACAAAGATCATCAGCCCTAACACGGACGATGCTAAATAT
gtcaatattccctgtgcttcctcatgccttctactaataagcgtccttctgcaagGTTGCAAGATGCACAAAGATCATCAGCCCTAACACGGACGATGCTAAATATGTCATCAATGTCAAGCAAATTGCGAAG
tactaat putative branch site (score: 48)
cgtccttct putative PPT
tactaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgcttgacgttcacctaactgactttttggttttattgcattcaaatgcatactgtcaatattccctgtgcttcctcatgccttctactaataagcgtccttctgcaagGTTGCAAGATGCACAAAGATCATCAGCCCTAACACGGACGATGCTAAATATGTCATCAATGTCAAGCAAATTGCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA