1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacggtactcatgcgagttctctacaattttactcctttcgccatttaatactagctggcatggttacttcgaatttgtgctaccgttttcttctgttttgctatttggatagtcaagatgcacttatccttttcagGTTTTAGGAGCATTATGGTACTTGCTATCTGTTGATCGCCAGACCGCGTGTTGGGAAAAATACTGTAGCAAAGAAGCGGGCTGCCAAAACAGATACCTGG
species | Oryza sativa |
transcript | LOC_Os06g08850.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTGGCAAGGAGCTGCTTACAATCTTCTATTATACATGATTGCTAGTCAT GTTTTAGGAGCATTATGGTACTTGCTATCTGTTGATCGCCAGACCGCGTGTEST: gi|29622015|gb|CB627026.1|CB627026
genomic: CTTGGCAAGGAGCTGCTTACAATCTTCTATTATACATGATTGCTAGTCATgtacggtact ... tccttttcagGTTTTAGGAGCATTATGGTACTTGCTATCTGTTGATCGCCAGACCGCGTGT
EST: CTTGGCAAGGAGCTGCTTACAATCTTCTATTATACATGATTGCTAGTCAT GTTTTAGGAGCATTATGGTACTTGCTATCTGTTGATCGCCAGACCGCGTGT
genomic: CTTGGCAAGGAGCTGCTTACAATCTTCTATTATACATGATTGCTAGTCATgtacggtact ... tccttttcagGTTTTAGGAGCATTATGGTACTTGCTATCTGTTGATCGCCAGACCGCGTGT
accgttttcttctgttttgctatttggatagtcaagatgcacttatccttttcagGTTTTAGGAGCATTATGGTACTTGCTATCTGTTGATCGCCAGACCGCGTGTTGGGAAAAATACTGTAGCAAAGAAGCGGGCTGCCAAAACAGATACCTGG
cacttatccttttc CT-rich tract
tattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggtactcatgcgagttctctacaattttactcctttcgccatttaatactagctggcatggttacttcgaatttgtgctaccgttttcttctgttttgctatttggatagtcaagatgcacttatccttttcagGTTTTAGGAGCATTATGGTACTTGCTATCTGTTGATCGCCAGACCGCGTGTTGGGAAAAATACTGTAGCAAAGAAGCGGGCTGCCAAAACAGATACCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC