1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...taacaattgtactttgttctgtaagtttcttgattggtaatgccttcaaattgtttcccaatctaaagttcctgttatcttactttgtttaatcttgaagGGGCTCTTCCCCTACCTTGGCCCTGTAGAATGAAGATCGCTCTCGGTGCTGCTAAAGGGCTAGCCTTTCTCCATGGAGGTCCCAAACCAGTAATTTACAG
species | Oryza sativa |
transcript | LOC_Os06g07230.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTATATGAATTCATGGCCCGGGGAAGTCTTGAAAACCATCTTTTCAGAA GGGCTCTTCCCCTACCTTGGCCCTGTAGAATGAAGATCGCTCTCGGTGCTGEST: gi|66914151|gb|CX100999.1|CX100999
genomic: TGTATATGAATTCATGGCCCGGGGAAGTCTTGAAAACCATCTTTTCAGAAgtaagcaatc ... aatcttgaagGGGCTCTTCCCCTACCTTGGCCCTGTAGAATGAAGATCGCTCTCGGTGCTG
EST: CCGGGGAAGTCTTGAAAACCATCTTTTCAGAA GGGCTCTTCCCCTACCTTGGCCCTGTAGAATGAAGATCGCTCTCGGTGCTGEST: gi|29677837|gb|CB674112.1|CB674112
genomic: CCGGGGAAGTCTTGAAAACCATCTTTTCAGAAgtaagcaatc ... aatcttgaagGGGCTCTTCCCCTACCTTGGCCCTGTAGAATGAAGATCGCTCTCGGTGCTG
EST: TGTATATGAATTCATGGCCCGGGGAAGTCTTGAAAACCATCTTTTCAGAA GGGCTCTTCCCCTACCTTGGCCCTGTAGAATGAAGATCGCTCTCGGTGCTGEST: gi|2801055|gb|AA754349.1|AA754349
genomic: TGTATATGAATTCATGGCCCGGGGAAGTCTTGAAAACCATCTTTTCAGAAgtaagcaatc ... aatcttgaagGGGCTCTTCCCCTACCTTGGCCCTGTAGAATGAAGATCGCTCTCGGTGCTG
EST: TGTATATGAATTCATGGCCCGGGGAAGTCTTGAAAACCATCTTTTCAGAA GGGCTCTTCCCCTACCTTGGCCCTGTAGAATGAAGATCGCTCTCGGTGCTGEST: gi|29642958|gb|CB647965.1|CB647965
genomic: TGTATATGAATTCATGGCCCGGGGAAGTCTTGAAAACCATCTTTTCAGAAgtaagcaatc ... aatcttgaagGGGCTCTTCCCCTACCTTGGCCCTGTAGAATGAAGATCGCTCTCGGTGCTG
EST: TGTATATGAATTCATGGCCCGGGGAAGTCTTGAAAACCATCTTTTCAGAA GGGCTCTTCCCCTACCTTGGCCCTGTAGAATGAAGATCGCTCTCGGTGCTG
genomic: TGTATATGAATTCATGGCCCGGGGAAGTCTTGAAAACCATCTTTTCAGAAgtaagcaatc ... aatcttgaagGGGCTCTTCCCCTACCTTGGCCCTGTAGAATGAAGATCGCTCTCGGTGCTG
tcaaattgtttcccaatctaaagttcctgttatcttactttgtttaatcttgaagGGGCTCTTCCCCTACCTTGGCCCTGTAGAATGAAGATCGCTCTCGGTGCTGCTAAAGGGCTAGCCTTTCTCCATGGAGGTCCCAAACCAGTAATTTACAG
ttactttgtttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacaattgtactttgttctgtaagtttcttgattggtaatgccttcaaattgtttcccaatctaaagttcctgttatcttactttgtttaatcttgaagGGGCTCTTCCCCTACCTTGGCCCTGTAGAATGAAGATCGCTCTCGGTGCTGCTAAAGGGCTAGCCTTTCTCCATGGAGGTCCCAAACCAGTAATTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - tgttctg
- - - - - - - - - - - - - - -ttgattg
- - - - - - - - - - - - - - - - - - - - tgccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttcctg