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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtgacctgcatttctgagggttttagcacattttagcctgatttgagccgttcgtactaccattttgatgtgcttttgcttcattatttgattattaagctgtttttgcattggtgtagGATCCTGTCGAGTCTTTACTCCGGGAGCGTGTGCATCTGGGACTATCAGTCGCAG

Basic information

species Oryza sativa
transcript LOC_Os06g05180.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g05180.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G000645_T03 (Zea mays), 3'ss of exon 3
gcaagtgacctgcat-ttctgagggt--tttagcacattttagcctgatttgagccgttcgtac--------taccattttgatgtgcttttgcttcattatttgattattaagctgtttttgcattggtgtagGATCCTGTCGAGTCTTTACTCCGGGAGCGTGTGCATCTGGGACTATCAGTCGCAG
| || |   |   || || || || |  || |    ||||    |  ||||   | |   || |        ||||  |||| ||||||| | ||| ||| || |||||| | |  ||||  |||||| || |||||||||||||| || ||||| ||||| || ||||||||||| |||||| | |||
gtaacttcacattatgttttggggatcattcactgaatttccagcc-atttcgtctgcctgtgcagtgtgcttaccgctttggtgtgcttgttctt-attgtt-gattat-atgtggttt--gcattg-tgcagGATCCTGTCGAGCCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAGGCACAG

upper sequence: LOC_Os06g05180.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G095348_T02 (Zea mays), 3'ss of exon 2
gcaagtgacctgcat-ttctgagggttttagcacattttagcctgatttgagccgttcgtact-accattttgatgtgcttttgcttcattatttgattattaagctgtttttgcattggtgtagGATCCTGTCGAGTCTTTACTCCGGGAGCGTGTGCATCTGGGACTATCAGTCGCAG
| ||||  |   | | || || |   || |    ||||    |  ||||  || | | || || ||  ||||| |||||||    || ||||| ||   |||           |||||| || ||||||||||||||||| ||||| ||||| || ||||||||||| |||||  | |||
gtaagttccgatcctgttatgggtcgttcactgaatttccagcc-atttctgctgcttgtgcttactgttttggtgtgcttg---ttgattatatgtggatt-----------gcattg-tgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatgtgcttttgcttcattatttgattattaagctgtttttgcattggtgtagGATCCTGTCGAGTCTTTACTCCGGGAGCGTGTGCATCTGGGACTATCAGTCGCAG
               ttcattatttgattat  TA-rich tract