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gtatgcttgaaatttctacatgacatgcattgttcatgattcggttacatgtaattattatgttactcagcctatttgtattttttatttcttccaaatcttctgatctatttgttgctctttcagAGTGAAGGTGTTCAAGTTTTTTTGTCAGAGTATGGGTATTGCTTATAGAGTTTTTCCAGAAGCGTTGAGTGGCTTTGCTGATCTACCCTTCAAAGGCATT
species | Oryza sativa |
transcript | LOC_Os06g02550.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATACTACGCAGTTCTTTGTCAGGCTTTGTGTTTGATGGCGTAACAAACCG AGTGAAGGTGTTCAAGNNNNNNNGTCAGAGTATGGGTATTGCTTATAGAGTEST: gi|58695956|gb|CK084643.1|CK084643
genomic: ATACTACGCAGTTCTTTGTCAGGCTTTGTGTTTGATGGCGTAACAAACCGgtatgcttga ... gctctttcagAGTGAAGGTGTTCAAGTTTTTTTGTCAGAGTATGGGTATTGCTTATAGAGT
EST: ATACTACGCAGTTCTTTGTCAGGCTTTGTGTTTGATGGCGTAACAAACCG AGTGAAGGTGTTCAAGNNNNNNNGTCAGAGTATGGGTATTGCTTATAGAGTEST: gi|29638208|gb|CB643217.1|CB643217
genomic: ATACTACGCAGTTCTTTGTCAGGCTTTGTGTTTGATGGCGTAACAAACCGgtatgcttga ... gctctttcagAGTGAAGGTGTTCAAGTTTTTTTGTCAGAGTATGGGTATTGCTTATAGAGT
EST: ATACTACGCAGTTCTTTGTCAGGCTTTGTGTTTGATGGCGTAACAAACCG AGTGAAGGTGTTCAAGNNNNNNNGTCAGAGTATGGGTATTGCTTATAGAGTEST: gi|29679855|gb|CB676130.1|CB676130
genomic: ATACTACGCAGTTCTTTGTCAGGCTTTGTGTTTGATGGCGTAACAAACCGgtatgcttga ... gctctttcagAGTGAAGGTGTTCAAGTTTTTTTGTCAGAGTATGGGTATTGCTTATAGAGT
EST: ATACTACGCAGTTCTTTGTCAGGCTTTGTGTTTGATGGCGTAACAAACCG AGTGAAGGTGTTCAAGNNNNNNNGTCAGAGTATGGGTATTGCTTATAGAGTEST: gi|58693047|gb|CK081734.1|CK081734
genomic: ATACTACGCAGTTCTTTGTCAGGCTTTGTGTTTGATGGCGTAACAAACCGgtatgcttga ... gctctttcagAGTGAAGGTGTTCAAGTTTTTTTGTCAGAGTATGGGTATTGCTTATAGAGT
EST: ATACTACGCAGTTCTTTGTCAGGCTTTGTGTTTGATGGCGTAACAAACCG AGTGAAGGTGTTCAAGNNNNNNNGTCAGAGTATGGGTATTGCTTATAGAGTEST: gi|29679854|gb|CB676129.1|CB676129
genomic: ATACTACGCAGTTCTTTGTCAGGCTTTGTGTTTGATGGCGTAACAAACCGgtatgcttga ... gctctttcagAGTGAAGGTGTTCAAGTTTTTTTGTCAGAGTATGGGTATTGCTTATAGAGT
EST: ATACTACGCAGTTCTTTGTCAGGCTTTGTGTTTGATGGCGTAACAAACCG AGTGAAGGTGTTCAAGNNNNNNNGTCAGAGTATGGGTATTGCTTATAGAGTEST: gi|58695198|gb|CK083885.1|CK083885
genomic: ATACTACGCAGTTCTTTGTCAGGCTTTGTGTTTGATGGCGTAACAAACCGgtatgcttga ... gctctttcagAGTGAAGGTGTTCAAGTTTTTTTGTCAGAGTATGGGTATTGCTTATAGAGT
EST: ATACTACGCAGTTCTTTGTCAGGCTTTGTGTTTGATGGCGTAACAAACCG AGTGAAGGTGTTCAAGNNNNNNNGTCAGAGTATGGGTATTGCTTATAGAGT
genomic: ATACTACGCAGTTCTTTGTCAGGCTTTGTGTTTGATGGCGTAACAAACCGgtatgcttga ... gctctttcagAGTGAAGGTGTTCAAGTTTTTTTGTCAGAGTATGGGTATTGCTTATAGAGT
ctatttgtattttttatttcttccaaatcttctgatctatttgttgctctttcagAGTGAAGGTGTTCAAGTTTTTTTGTCAGAGTATGGGTATTGCTTATAGAGTTTTTCCAGAAGCGTTGAGTGGCTTTGCTGATCTACCCTTCAAAGGCATT
ttctgat putative branch site (score: 44)
tttgttgctctttc putative PPT
tattttttatttcttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcttgaaatttctacatgacatgcattgttcatgattcggttacatgtaattattatgttactcagcctatttgtattttttatttcttccaaatcttctgatctatttgttgctctttcagAGTGAAGGTGTTCAAGTTTTTTTGTCAGAGTATGGGTATTGCTTATAGAGTTTTTCCAGAAGCGTTGAGTGGCTTTGCTGATCTACCCTTCAAAGGCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT