1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaatcagattgcttgtttgaatagcaacattgtagctttgacgccataatgccgttgaaactttaccatgtgttatatttggatcgtgattctgatctcaataaacctattgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATCACCGCCGTAAGAACCGCTCACTTGAAGGTCTGCAGGCCAATGTCCAGA
species | Oryza sativa |
transcript | LOC_Os06g02510.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAG GCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATEST: gi|58670768|gb|CK059454.1|CK059454
genomic: GGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
EST: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAG GCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATEST: gi|29686267|gb|CB682542.1|CB682542
genomic: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
EST: GGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAG GCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATEST: gi|58595081|gb|CF993389.1|CF993389
genomic: GGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
EST: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAG GCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATEST: gi|86594633|gb|CI255709.1|CI255709
genomic: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
EST: GGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAG GCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATEST: gi|218504798|gb|FG948126.1|FG948126
genomic: GGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
EST: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAG GCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATEST: gi|86500579|gb|CI143212.1|CI143212
genomic: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
EST: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAG GCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATEST: gi|86822747|gb|CI251821.1|CI251821
genomic: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
EST: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCGTTGAAGAGCTGAAG GCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATEST: gi|87035705|gb|CI190327.1|CI190327
genomic: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
EST: GGAAGGGGCTTCACCCTTGAAGAGCTGAAG GCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATEST: gi|86594654|gb|CI255730.1|CI255730
genomic: GGAAGGGGCTTCACCCTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
EST: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAG GCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATEST: gi|163920526|gb|EG709582.1|EG709582
genomic: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
EST: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAG GCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATEST: gi|86518436|gb|CI158642.1|CI158642
genomic: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
EST: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAG GCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATEST: gi|86498221|gb|CI140854.1|CI140854
genomic: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
EST: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAG GCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATEST: gi|7212765|gb|D40121.2|D40121
genomic: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
EST: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAG GCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATEST: gi|5667631|gb|AU077891.1|AU077891
genomic: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
EST: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAG GCAGCTGGGATCCCCAAGAAGTTTGCCCCANCCATTGGCATCTCAGTGGATEST: gi|117233207|gb|CT848039.1|CT848039
genomic: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
EST: ACAACATGAAGTCTAGAGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAG GCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATEST: gi|25801409|gb|CA757370.1|CA757370
genomic: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
EST: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAG GCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATEST: gi|86499518|gb|CI142151.1|CI142151
genomic: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
EST: CTTGAAGAGCTGAAG GCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATEST: gi|55435028|gb|CV730641.1|CV730641
genomic: CTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
EST: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAG GCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATEST: gi|86823545|gb|CI256472.1|CI256472
genomic: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
EST: GGCTTCACCCTTGAAGAGCTGAAG GCACCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATTTCAGTGGATEST: gi|86823022|gb|CI253955.1|CI253955
genomic: GGCTTCACCCTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
EST: TTCACCCTTGAAGAGCTGAAG GCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATEST: gi|89165147|gb|CI255204.1|CI255204
genomic: TTCACCCTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
EST: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAG GCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATEST: gi|29686266|gb|CB682541.1|CB682541
genomic: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
EST: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAG GCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATEST: gi|58682724|gb|CK071411.1|CK071411
genomic: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
EST: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAG GCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
genomic: ACAACATGAAGTCTAGGGCTGGAAGGGGCTTCACCCTTGAAGAGCTGAAGgtaaatcaga ... ttgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGAT
accatgtgttatatttggatcgtgattctgatctcaataaacctattgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATCACCGCCGTAAGAACCGCTCACTTGAAGGTCTGCAGGCCAATGTCCAGA
ttctgat putative branch site (score: 3)
tgttatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatcagattgcttgtttgaatagcaacattgtagctttgacgccataatgccgttgaaactttaccatgtgttatatttggatcgtgattctgatctcaataaacctattgcacacagGCAGCTGGGATCCCCAAGAAGTTTGCCCCAACCATTGGCATCTCAGTGGATCACCGCCGTAAGAACCGCTCACTTGAAGGTCTGCAGGCCAATGTCCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG