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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaaatctcatcttctgaatctctctctcgatcgatcattgctttgcttctgaaatctgaatgtctgaaactgaatgtgtggggagttgcagATCTACGTGGTTGATTCGATGGACAGGGAAAGGATAGGAGTAGCCAAGGAGGAGTTCCAGGCCATCATCCGCGACCCCCTCATGCTCAACAGCGTCATCC

Basic information

species Oryza sativa
transcript LOC_Os06g02390.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g02390.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G058474_T01 (Zea mays), 3'ss of exon 3
gttaaatctcatcttctgaatctctctctcgatcgatcattgctttgcttctgaaatctgaatg-tctgaaactgaatgtgtggggagttgcagATCTACGTGGTTGATTCGATGGACAGGGAAAGGATAGGAGTAGCCAAGGAGGAGTTCCAGGCCATCATCCGCGACCCCCTCATGCTCAACAGCGTCATCC
     || ||   | | |  || |||||  |  |     |  | ||| | |   |  ||||||| | |     |   |||||| |   | |||||| ||||| ||||||||| ||||||||||  |||| || || |||| ||||||||||||||||||| ||   ||||| |||||||||| ||||||  |||
---gtatttccattccagtttccctctcctgtactccattctcgttgatgcgttatgctgaatgatttttttttttttgtgtgtg---tcgcagATATACGTTGTTGATTCGGTGGACAGGGACCGGATTGGGGTTGCCAGGGAGGAGTTCCAGGCCATCGTCAAGGACCCGCTCATGCTCAGCAGCGTTGTCC