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...ttttcttattgaacaagtcaactggaggtttctggattatctgtgtaacctagttccagaatttgagcagaattttcaagtaacgatctctgtactgcagGTTGAACTGGAGGATCCTGTTGAAAATATTGGAGCTAAGTTGGTTAGGCAAGCAGCAGCAAAGACCAATGATTTAGCTGGAGATGGCACAACTACTTCTG
species | Oryza sativa |
transcript | LOC_Os06g02380.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTATGGGTCCCCTAGGATTGTCAATGATGGTGTTACAGTTGCAAGAGAG GTTGAACTGGAGGATCCTGTTGAAEST: gi|29632317|gb|CB637326.1|CB637326
genomic: AGTATGGGTCCCCTAGGATTGTCAATGATGGTGTTACAGTTGCAAGAGAGgtatattaca ... tgtactgcagGTTGAACTGGAGGATCCTGTTGAA
EST: AGTATGGGTCCCCTAGGATTGTCAATGATGGTGTTACAGTTGCAAGAGAG GTTGAACTGGAGGATCCTGTTGAAAATATTGGAGCTAAGTTGGTTAGGCAAEST: gi|2312427|gb|C28582.1|C28582
genomic: AGTATGGGTCCCCTAGGATTGTCAATGATGGTGTTACAGTTGCAAGAGAGgtatattaca ... tgtactgcagGTTGAACTGGAGGATCCTGTTGAAAATATTGGAGCTAAGTTGGTTAGGCAA
EST: AGTATGGGTCCCCTAGGATTGTCAATGATGGTGTTACAGTTGCAAGAGAG GTTGAACTNGAGGATCCTNTTGAAAATATTGGAGCTAAGTTGGTTAGGCAAEST: gi|58587940|gb|CF986248.1|CF986248
genomic: AGTATGGGTCCCCTAGGATTGTCAATGATGGTGTTACAGTTGCAAGAGAGgtatattaca ... tgtactgcagGTTGAACTGGAGGATCCTGTTGAAAATATTGGAGCTAAGTTGGTTAGGCAA
EST: AGTATGGGTCCCCTAGGGTGGTCAATGATGGTGTTACAGTTGCAAGAGAG GTTGAACTGGAGGATCCTGTTGAAAATATTGGAGCTAAGTTGGTTAGGCAAEST: gi|14571276|gb|BI118644.1|BI118644
genomic: AGTATGGGTCCCCTAGGATTGTCAATGATGGTGTTACAGTTGCAAGAGAGgtatattaca ... tgtactgcagGTTGAACTGGAGGATCCTGTTGAAAATATTGGAGCTAAGTTGGTTAGGCAA
EST: AGTATGGGTCCCCTAAGATTGTCAATGATGGTGTTACAGTTGCAAGAGAG GTTGAACTGGAGGATCCTGTTGAAAATATTGGAGCTAAGTTGGTTAGGCAAEST: gi|66922815|gb|CX109663.1|CX109663
genomic: AGTATGGGTCCCCTAGGATTGTCAATGATGGTGTTACAGTTGCAAGAGAGgtatattaca ... tgtactgcagGTTGAACTGGAGGATCCTGTTGAAAATATTGGAGCTAAGTTGGTTAGGCAA
EST: AGTATGGGTCCCCTAGGATTGTCAATGATGGTGTTACAGTTGCAAGAGAG GTTGAACTGGAGGATCCTGTTGAAAATATTGGAGCTAAGTTGGTTAGGCAAEST: gi|58668459|gb|CK057145.1|CK057145
genomic: AGTATGGGTCCCCTAGGATTGTCAATGATGGTGTTACAGTTGCAAGAGAGgtatattaca ... tgtactgcagGTTGAACTGGAGGATCCTGTTGAAAATATTGGAGCTAAGTTGGTTAGGCAA
EST: AGTATGGGTCCCCTAGGATTGTCAATGATGGTGTTACAGTTGCAAGAGAG GTTGAACTGGAGGATCCTGTTGAAAATATTGGAGCTAAGTTGGTTAGGCAAEST: gi|58664250|gb|CK052936.1|CK052936
genomic: AGTATGGGTCCCCTAGGATTGTCAATGATGGTGTTACAGTTGCAAGAGAGgtatattaca ... tgtactgcagGTTGAACTGGAGGATCCTGTTGAAAATATTGGAGCTAAGTTGGTTAGGCAA
EST: AGTATGGGTCCCCTAGGATTGTCAATGATGGTGTTACAGTTGCAAGAGAG GTTGAACTGGAGGATCCTGTTGAAAATATTGGAGCTAAGTTGGTTAGGCAAEST: gi|58606543|gb|CK034576.1|CK034576
genomic: AGTATGGGTCCCCTAGGATTGTCAATGATGGTGTTACAGTTGCAAGAGAGgtatattaca ... tgtactgcagGTTGAACTGGAGGATCCTGTTGAAAATATTGGAGCTAAGTTGGTTAGGCAA
EST: AGTATGGGTCCCCTAGGATTGTCAATGATGGTGTTACAGTTGCAAGAGAG GTTGAACTGGAGGATCCTGTTGAAAATATTGGAGCTAAGTTGGTTAGGCAA
genomic: AGTATGGGTCCCCTAGGATTGTCAATGATGGTGTTACAGTTGCAAGAGAGgtatattaca ... tgtactgcagGTTGAACTGGAGGATCCTGTTGAAAATATTGGAGCTAAGTTGGTTAGGCAA
taacctagttccagaatttgagcagaattttcaagtaacgatctctgtactgcagGTTGAACTGGAGGATCCTGTTGAAAATATTGGAGCTAAGTTGGTTAGGCAAGCAGCAGCAAAGACCAATGATTTAGCTGGAGATGGCACAACTACTTCTG
aagtaac putative branch site (score: 2)
tctctgt putative PPT
aattttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttcttattgaacaagtcaactggaggtttctggattatctgtgtaacctagttccagaatttgagcagaattttcaagtaacgatctctgtactgcagGTTGAACTGGAGGATCCTGTTGAAAATATTGGAGCTAAGTTGGTTAGGCAAGCAGCAGCAAAGACCAATGATTTAGCTGGAGATGGCACAACTACTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - gaacaag
- - - - - - - - - - - - - -gtttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcagaa