1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acgtaaagaaaaaggagttctaacccattcattgtacttcctaaaactactgcatgtcttgttgttttcttaacatgattttgcatgtccttatttgcagCCTGTGACACGTTTTGCATGTGCCTTGTTTTCACTACCGGTTCCTCCAGCAAACTCTGACGAACCAAAGGACGAAGCTCCTTATTCAGCAAGAACTGTTC
species | Oryza sativa |
transcript | LOC_Os06g02130.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTATGAGGAAGAAGGCCAAAACAATATCAAAGGGAAGATATGGGAATCG CCTGTGACACGTTTTGCATGTGCCTTGTTTTCACTACCGGTTCCTCCAGCAEST: gi|29622064|gb|CB627075.1|CB627075
genomic: GCTATGAGGAAGAAGGCCAAAACAATATCAAAGGGAAGATATGGGAATCGgtatgtatct ... ttatttgcagCCTGTGACACGTTTTGCATGTGCCTTGTTTTCACTACCGGTTCCTCCAGCA
EST: GCTATGAGGAAGAAGGCCAAAACAATATCAAAGGGAAGATATGGGAATCG CCTGTGACACGTTTTGCATGTGCCTTGTTTTCACTACCGGTTCCTCCAGCAEST: gi|58592696|gb|CF991004.1|CF991004
genomic: GCTATGAGGAAGAAGGCCAAAACAATATCAAAGGGAAGATATGGGAATCGgtatgtatct ... ttatttgcagCCTGTGACACGTTTTGCATGTGCCTTGTTTTCACTACCGGTTCCTCCAGCA
EST: GCTATGAGGAAGAAGGCCAAAACAATATCAAAGGGAAGATATGGGAATTG CCTGTGAGACGTTTTGCATGTGCCTTGTTTTCACTACCGGTTCCTCCAGCA
genomic: GCTATGAGGAAGAAGGCCAAAACAATATCAAAGGGAAGATATGGGAATCGgtatgtatct ... ttatttgcagCCTGTGACACGTTTTGCATGTGCCTTGTTTTCACTACCGGTTCCTCCAGCA
actactgcatgtcttgttgttttcttaacatgattttgcatgtccttatttgcagCCTGTGACACGTTTTGCATGTGCCTTGTTTTCACTACCGGTTCCTCCAGCAAACTCTGACGAACCAAAGGACGAAGCTCCTTATTCAGCAAGAACTGTTC
tcttaac putative branch site (score: 12)
tccttattt putative PPT
ttttcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgtaaagaaaaaggagttctaacccattcattgtacttcctaaaactactgcatgtcttgttgttttcttaacatgattttgcatgtccttatttgcagCCTGTGACACGTTTTGCATGTGCCTTGTTTTCACTACCGGTTCCTCCAGCAAACTCTGACGAACCAAAGGACGAAGCTCCTTATTCAGCAAGAACTGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC