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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catcgcaacagatttatacttacttaatccactaaaagtaaacatatatgctttagtttttaataatggacataatcataagctattttgctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCCTGCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAA

Basic information

species Oryza sativa
transcript LOC_Os05g51670.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g51670.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G038598_T02 (Zea mays), 3'ss of exon 3
ca-tcgcaacagatttatacttacttaatccactaaaagtaaacatatatgctttagtttttaataatggacataatc--ataagctattttgctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCCTGCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAA
|| |||   |||  ||||| | |  |||||| |  |     |    |   |   | || | |   || |   |  |    | | | |   ||| ||    |||||||||||||| ||||| ||||||||||| |||||||||||||| || |||||||| ||||||| ||| || || || |  || ||||| ||  | ||||
cactcgtttcag-cttata-taatataatcctcgcatgaatacagcagggggcctggtctctgcaaaagctaactactgaacatgtttccttg-tcattacagCTGGTGTTCTCGTCATCTGCAACTGTCTATGGGTGGCCCAAGGAAGTACCCTGCACCGAAGAATTCCCGCTCTGCGCCACCAATCCCTATGGGCGGACAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218494764|gb|FG965511.1|FG965511
EST:     CATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: CATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|58588020|gb|CF986328.1|CF986328
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCC
EST: gi|33681834|gb|CF310073.1|CF310073
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGT
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGT
EST: gi|38480755|gb|CF964844.1|CF964844
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|11118239|gb|AU163427.1|AU163427
EST:     ACCCATCACTCTCCTGGCAGGTCATGGGCCGGCACATGGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGGAGGTGCC
genomic: ACC-ATCACTCTCCTG-CAGGTCATGG-CCG-CACATGG-CTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGG-AGGTGCC
EST: gi|58588964|gb|CF987272.1|CF987272
EST:     CGGCACCATCACTCTCCTGCAGGTCATGGCCTGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: CGGCACCATCACTCTCCTGCAGGTCATGGCC-GCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|88325284|gb|CI675078.1|CI675078
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|33680274|gb|CF308513.1|CF308513
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCA
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCA
EST: gi|58690277|gb|CK078964.1|CK078964
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|33798368|gb|CF325041.1|CF325041
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|218494080|gb|FG967420.1|FG967420
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|29621545|gb|CB626556.1|CB626556
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|33685171|gb|CF313410.1|CF313410
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGG
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGG
EST: gi|88444775|gb|CI696203.1|CI696203
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|33681916|gb|CF310155.1|CF310155
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|33683060|gb|CF311299.1|CF311299
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTA
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTA
EST: gi|88414437|gb|CI691602.1|CI691602
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCA
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCA
EST: gi|33681687|gb|CF309926.1|CF309926
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|58586418|gb|CF984726.1|CF984726
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGG
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGG
EST: gi|33693008|gb|CF321247.1|CF321247
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|218497254|gb|FG946482.1|FG946482
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|88589590|gb|CI705487.1|CI705487
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCAT
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCAT
EST: gi|33682645|gb|CF310884.1|CF310884
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|33680697|gb|CF308936.1|CF308936
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         N
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccag-
EST: gi|33680697|gb|CF308936.1|CF308936
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         N
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccag-
EST: gi|33692560|gb|CF320799.1|CF320799
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACCGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|88365496|gb|CI680137.1|CI680137
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGG
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGG
EST: gi|88577618|gb|CI674216.1|CI674216
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTG
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTG
EST: gi|29684846|gb|CB681121.1|CB681121
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|33679540|gb|CF307779.1|CF307779
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|33686980|gb|CF315219.1|CF315219
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|33692738|gb|CF320977.1|CF320977
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTC
EST: gi|218495472|gb|FG969371.1|FG969371
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|218498358|gb|FG945087.1|FG945087
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGG
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGG
EST: gi|33692280|gb|CF320519.1|CF320519
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCC
EST: gi|58592265|gb|CF990573.1|CF990573
EST:     TCGGAACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTAC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTAC
EST: gi|218488558|gb|FG963890.1|FG963890
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|33681223|gb|CF309462.1|CF309462
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|218482145|gb|FG968615.1|FG968615
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|33685111|gb|CF313350.1|CF313350
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|33681821|gb|CF310060.1|CF310060
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|88587804|gb|CI705579.1|CI705579
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGNAACTGTCTA
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTA
EST: gi|33688841|gb|CF317080.1|CF317080
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|58590563|gb|CF988871.1|CF988871
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|33681511|gb|CF309750.1|CF309750
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|29662182|gb|CB658457.1|CB658457
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|33686993|gb|CF315232.1|CF315232
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGCTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|33684323|gb|CF312562.1|CF312562
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         N
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccag-
EST: gi|33684323|gb|CF312562.1|CF312562
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         N
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccag-
EST: gi|58657953|gb|CK046633.1|CK046633
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|33693695|gb|CF321934.1|CF321934
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGG
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGG
EST: gi|218501599|gb|FG966518.1|FG966518
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|58689696|gb|CK078383.1|CK078383
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCC
EST: gi|88467105|gb|CI696464.1|CI696464
EST:     TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAG                         CTGGTGTTCTCATCATCCGCAACTGTCTA
genomic: TCGGCACCATCACTCTCCTGCAGGTCATGGCCGCACATGGCTGCACCAAGgtacagcccc ... ctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgctttagtttttaataatggacataatcataagctattttgctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCCTGCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAA
            ttttaat  putative branch site (score: 3)
                                        ttttgctcc  putative PPT
      tttagtttttaataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
catcgcaacagatttatacttacttaatccactaaaagtaaacatatatgctttagtttttaataatggacataatcataagctattttgctccggccagCTGGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCCTGCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
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- - - - - - - - - - - - - - - actaaaa
- - - - - - - - - - - - - - - - - - - - - - - tatgctt