1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgcatttttttctcaaaataaagtgttgttttgcatgaattggtgagtaaacaataattgctctcttatttctttgctctttggtatttgttaactgtagGGCTTGAGGTTGAATCAGCTTTAAGGCATAAAGCAAGATTAGAGAGGCATCAACGCACAGCTGAGCGTGTG
species | Oryza sativa |
transcript | LOC_Os05g50370.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGAGCGGTTTCCAGTAACTTAATGAGAAACCCAGATTCATATAGCAAAG GGCTTGAGGTTGAATCAGCTTTAAGGCATAAAGCAAGATTAGAGAGGCATCEST: gi|13420889|gb|AU174979.1|AU174979
genomic: GAGAGCGGTTTCCAGTAACTTAATGAGAAACCCAGATTCATATAGCAAAGgtacttatta ... ttaactgtagGGCTTGAGGTTGAATCAGCTTTAAGGCATAAAGCAAGATTAGAGAGGCATC
EST: GAGAGCGGTTTCCAGTAACTTAATGAGAAACCCAGATTCATATAGCAAAG GGCTTGAGGTTGAATCAGCTTTAAGGCATAAAGCAAGATTAGAGAGGCATCEST: gi|13420888|gb|AU174978.1|AU174978
genomic: GAGAGCGGTTTCCAGTAACTTAATGAGAAACCCAGATTCATATAGCAAAGgtacttatta ... ttaactgtagGGCTTGAGGTTGAATCAGCTTTAAGGCATAAAGCAAGATTAGAGAGGCATC
EST: GAGAGCGGTTTCCAGTAACTTAATGAGAAACCCAGATTCATATAGCAAAG GGCTTGAGGTTGAATCAGCTTTAAGGCATAAAGCAAGATTAGAGAGGCATCEST: gi|218480068|gb|FG963241.1|FG963241
genomic: GAGAGCGGTTTCCAGTAACTTAATGAGAAACCCAGATTCATATAGCAAAGgtacttatta ... ttaactgtagGGCTTGAGGTTGAATCAGCTTTAAGGCATAAAGCAAGATTAGAGAGGCATC
EST: GAGAGCGGTTTCCAGTAACTTAATGAGAAACCCAGATTCATATAGCAAAG GGCTTGAGGTTGAATCAGCTTTAAGGCATAAAGCAAGATTAGAGAGGCATC
genomic: GAGAGCGGTTTCCAGTAACTTAATGAGAAACCCAGATTCATATAGCAAAGgtacttatta ... ttaactgtagGGCTTGAGGTTGAATCAGCTTTAAGGCATAAAGCAAGATTAGAGAGGCATC
agtaaacaataattgctctcttatttctttgctctttggtatttgttaactgtagGGCTTGAGGTTGAATCAGCTTTAAGGCATAAAGCAAGATTAGAGAGGCATCAACGCACAGCTGAGCGTGTG
tgttaac putative branch site (score: 28)
ttatttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcatttttttctcaaaataaagtgttgttttgcatgaattggtgagtaaacaataattgctctcttatttctttgctctttggtatttgttaactgtagGGCTTGAGGTTGAATCAGCTTTAAGGCATAAAGCAAGATTAGAGAGGCATCAACGCACAGCTGAGCGTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
tgcattt
- - - - - - - -aaataaa
- - - - - - - - - - - -tgttgtt
- - - - - - - - - - - - - - - -tgcatga
- - - - - - - - - - - - - - - - - - - - - - - - -aacaata