1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...attttcttttcatttatttctaaattttaaccacccttttggtagcttaaggaaaattgtatgtttgacagtcctgttttctgttgtttcatccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAGCGAGGATAGTGTTACAGTAGGTGATCTGGTTGTGAAAGATCAG
species | Oryza sativa |
transcript | LOC_Os05g49200.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTCCACTCTCGCTACNAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|29669082|gb|CB665357.1|CB665357
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|58671799|gb|CK060485.1|CK060485
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|29664332|gb|CB660607.1|CB660607
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|58672084|gb|CK060770.1|CK060770
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|58673918|gb|CK062604.1|CK062604
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|58600889|gb|CK011417.1|CK011417
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|58656789|gb|CK045469.1|CK045469
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|58597788|gb|CK008316.1|CK008316
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|29681831|gb|CB678106.1|CB678106
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|29675128|gb|CB671403.1|CB671403
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|88385492|gb|CI564152.1|CI564152
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|117249803|gb|CT863399.1|CT863399
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|58658759|gb|CK047439.1|CK047439
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|29657722|gb|CB653997.1|CB653997
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|29687486|gb|CB683761.1|CB683761
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|29642551|gb|CB647558.1|CB647558
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|58670333|gb|CK059019.1|CK059019
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|38568602|gb|CD670817.1|CD670817
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAAAATG GAAAACCAGCTGCCATTTAGTATGGCACTGGTTCCAATTTGCTGGGEST: gi|29643320|gb|CB648327.1|CB648327
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTC-AATT-GCTGGG
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|29660989|gb|CB657264.1|CB657264
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|29627821|gb|CB632832.1|CB632832
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|58668447|gb|CK057133.1|CK057133
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|58694996|gb|CK083683.1|CK083683
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|29660449|gb|CB656724.1|CB656724
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|29677506|gb|CB673781.1|CB673781
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|29673512|gb|CB669787.1|CB669787
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|218478948|gb|FG952780.1|FG952780
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGG-TTTTCAEST: gi|29639173|gb|CB644182.1|CB644182
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|58661737|gb|CK050417.1|CK050417
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGEST: gi|58681561|gb|CK070248.1|CK070248
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGG
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|29636406|gb|CB641415.1|CB641415
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|163927035|gb|EG710226.1|EG710226
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|29615519|gb|CB620531.1|CB620531
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|29644200|gb|CB649207.1|CB649207
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|58598940|gb|CK009468.1|CK009468
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTEST: gi|8251272|gb|AU091468.1|AU091468
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTT
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|29660445|gb|CB656720.1|CB656720
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|58600047|gb|CK010575.1|CK010575
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|58670154|gb|CK058840.1|CK058840
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|58666874|gb|CK055560.1|CK055560
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|29677888|gb|CB674163.1|CB674163
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|58597894|gb|CK008422.1|CK008422
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCEST: gi|58673500|gb|CK062186.1|CK062186
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGC
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|29639939|gb|CB644948.1|CB644948
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAGGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAEST: gi|58655126|gb|CK043806.1|CK043806
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
EST: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATG GAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
genomic: CTTCCACTCTCGCTACAAGTCCGGACAGTCGAGCACTTATCAGAAGAATGgtccgtgcct ... atccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCA
cttaaggaaaattgtatgtttgacagtcctgttttctgttgtttcatccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAGCGAGGATAGTGTTACAGTAGGTGATCTGGTTGTGAAAGATCAG
gtttgac putative branch site (score: 4)
tcctgttttctgttgt putative PPT
aaaattgtatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttcttttcatttatttctaaattttaaccacccttttggtagcttaaggaaaattgtatgtttgacagtcctgttttctgttgtttcatccctccagGAAAACCAGCTGCCATTCAGTATGGCACTGGTTCAATTGCTGGGTTTTTCAGCGAGGATAGTGTTACAGTAGGTGATCTGGTTGTGAAAGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA