1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acgactctgaaacatttcaccttactaggatattagctatgcaactttaaactgtagctggattagttaaccacagcttggaattgtcaatgtgacacagATAGTTGATGGCAAGGAGCTCCTGAATGAAAGAACAAACACTGAGAACCGGTATCTGAAGAAG
species | Oryza sativa |
transcript | LOC_Os05g48160.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGTGATGAACTGCGGCGGCGGCGGCAGCTGCGGCACTTGCATCGTCGAG ATAGTTGATGGCAAGGAGCTCCTGAATGAAAGAACAAACACTGAGAACCGGEST: gi|86528962|gb|CI169168.1|CI169168
genomic: AGGTGATGAACTGCGGCGGCGGCGGCAGCTGCGGCACTTGCATCGTCGAGgtaccctact ... tgtgacacagATAGTTGATGGCAAGGAGCTCCTGAATGAAAGAACAAACACTGAGAACCGG
EST: AGGTGATGAACTGCGGCGGCGGCGGCAGCTGCGGCACTTGCATCGTCGAG ATAGTTGATGGCAAGGAGCTCCTGAATGAAAGAACAAACACTGAGAACCGG
genomic: AGGTGATGAACTGCGGCGGCGGCGGCAGCTGCGGCACTTGCATCGTCGAGgtaccctact ... tgtgacacagATAGTTGATGGCAAGGAGCTCCTGAATGAAAGAACAAACACTGAGAACCGG
tttaaactgtagctggattagttaaccacagcttggaattgtcaatgtgacacagATAGTTGATGGCAAGGAGCTCCTGAATGAAAGAACAAACACTGAGAACCGGTATCTGAAGAAG
agttaac putative branch site (score: 3)
attagttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgactctgaaacatttcaccttactaggatattagctatgcaactttaaactgtagctggattagttaaccacagcttggaattgtcaatgtgacacagATAGTTGATGGCAAGGAGCTCCTGAATGAAAGAACAAACACTGAGAACCGGTATCTGAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG