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gtgagttcttttgccacttctgttaatttgttcagttcatgggttcttcagaactagatgaatccggctataacttattaacttgctggttctgaaactctattttcagAAGTACAACAACATCACCAGAGGTGTCATCTGCCATGGGGATAAAAGTGTCATCAAAGAAGGGCACAAGAGCTTCCCAAGTGGCCATACCTCAT
species | Oryza sativa |
transcript | LOC_Os05g47660.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCGGCCTCGCCCGAATTTCTTCTGGCGATGCTTTCCTGACGGGATCCCG AAGTACAACAACATCACCAGAGGTGTCATCTGCCATGGGGATAAAAGTGTCEST: gi|25777854|gb|CA752604.1|CA752604
genomic: GCCGGCCTCGCCCGAATTTCTTCTGGCGATGCTTTCCTGACGGGATCCCGgtgagttctt ... ctattttcagAAGTACAACAACATCACCAGAGGTGTCATCTGCCATGGGGATAAAAGTGTC
EST: GCCGGCCTCGCCCGAATTTCTTCTGGCGATGCTTTCCTGACGGGATCCCG AAGTACAACAACATCACCAGAGGTGTCATCTGCCATGGGGATAAAAGTGTC
genomic: GCCGGCCTCGCCCGAATTTCTTCTGGCGATGCTTTCCTGACGGGATCCCGgtgagttctt ... ctattttcagAAGTACAACAACATCACCAGAGGTGTCATCTGCCATGGGGATAAAAGTGTC
tagatgaatccggctataacttattaacttgctggttctgaaactctattttcagAAGTACAACAACATCACCAGAGGTGTCATCTGCCATGGGGATAAAAGTGTCATCAAAGAAGGGCACAAGAGCTTCCCAAGTGGCCATACCTCAT
tattaac putative branch site (score: 4)
ctctattttc putative PPT
tataacttattaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttcttttgccacttctgttaatttgttcagttcatgggttcttcagaactagatgaatccggctataacttattaacttgctggttctgaaactctattttcagAAGTACAACAACATCACCAGAGGTGTCATCTGCCATGGGGATAAAAGTGTCATCAAAGAAGGGCACAAGAGCTTCCCAAGTGGCCATACCTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT