1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agatgttttactttgacttggaaggactgtacagctttgtgaagaattttgtaaagggagtggtttgtgttgacatttgcaaatattgcttttctaacagATATCAGGTGAGAGTGTGGGAGAAGTAATAGTTGTACAGGACATGCATGAGCGGAAAGCGGAGATGGCTCGGCGATCCAAAGCGTTCATTGCTCTTCCTG
species | Oryza sativa |
transcript | LOC_Os05g46360.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTGATTCCTAGAGCTCTCATGGCTGTCGAG ATATCAGGTGAGAGTGTGGGAGAAGTAATAGTTGTACAGGACATGCATGAGEST: gi|58592728|gb|CF991036.1|CF991036
genomic: GGTGATTCCTAGAGCTCTCATGGCTGTCGAGgtctgcaatc ... tttctaacagATATCAGGTGAGAGTGTGGGAGAAGTAATAGTTGTACAGGACATGCATGAG
EST: GGTGATTCCTAGAGCTCTCATGGCTGTCGAG ATATCAGGTGAGAGTGTGGGAGAAGTAATAGTTGTACAGGACATGCATGAG
genomic: GGTGATTCCTAGAGCTCTCATGGCTGTCGAGgtctgcaatc ... tttctaacagATATCAGGTGAGAGTGTGGGAGAAGTAATAGTTGTACAGGACATGCATGAG
attttgtaaagggagtggtttgtgttgacatttgcaaatattgcttttctaacagATATCAGGTGAGAGTGTGGGAGAAGTAATAGTTGTACAGGACATGCATGAGCGGAAAGCGGAGATGGCTCGGCGATCCAAAGCGTTCATTGCTCTTCCTG
tgttgac putative branch site (score: 24)
ttgcttttct putative PPT
aaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatgttttactttgacttggaaggactgtacagctttgtgaagaattttgtaaagggagtggtttgtgttgacatttgcaaatattgcttttctaacagATATCAGGTGAGAGTGTGGGAGAAGTAATAGTTGTACAGGACATGCATGAGCGGAAAGCGGAGATGGCTCGGCGATCCAAAGCGTTCATTGCTCTTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - -tgacttg
- - - - - - - - - - - - - - -tacagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tattgct