1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tgactacggttatatttagacttagttgatattactgtgaatctgttatctgctctgaagcgtatcctcaggcaacgtgcattttttttttccggtgcagCCATTTGTAGAGAGTTTATCTAATTGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAG
species | Oryza sativa |
transcript | LOC_Os05g45960.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGGTGAAAAATTTATCAAAGTTGCTGAGGTTCAGGAAGCAGAAATAAAG CCATTTGTAGAGAGTTTATCTAATTGCCCAAAGCATGGACTTCACAACCCAEST: gi|33795723|gb|CF323731.1|CF323731
genomic: ATGGTGAAAAATTTATCAAAGTTGCTGAGGTTCAGGAAGCAGAAATAAAGgtacgttagt ... tccggtgcagCCATTTGTAGAGAGTTTATCTAATTGCCCAAAGCATGGACTTCACAACCCA
EST: ATGGTGAAAAATTTATCAAAGTTGCTGAGGTTCAGGAAGCAGAAATAAAG CCATTTGTAGAGAGTTTATCTAATTGCCCAAAGCATGGACTTCACAACCCAEST: gi|58685594|gb|CK074281.1|CK074281
genomic: ATGGTGAAAAATTTATCAAAGTTGCTGAGGTTCAGGAAGCAGAAATAAAGgtacgttagt ... tccggtgcagCCATTTGTAGAGAGTTTATCTAATTGCCCAAAGCATGGACTTCACAACCCA
EST: ATGGTGAAAAATTTATCAAAGTTGCTGAGGTTCAGGAAGCAGAAATAAAG CCATTTGTAGAGAGTTTATCTAATTGCCCAAAGCATGGACTTCACAACCCAEST: gi|33793870|gb|CF322823.1|CF322823
genomic: ATGGTGAAAAATTTATCAAAGTTGCTGAGGTTCAGGAAGCAGAAATAAAGgtacgttagt ... tccggtgcagCCATTTGTAGAGAGTTTATCTAATTGCCCAAAGCATGGACTTCACAACCCA
EST: ATGGTGAAAAATTTATCAAAGTTGCTGAGGTTCAGGAAGCAGAAATAAAG CCATTTGTAGAGAGTTTATCTAATTGCCCAAAGCATGGACTTCACAACCCA
genomic: ATGGTGAAAAATTTATCAAAGTTGCTGAGGTTCAGGAAGCAGAAATAAAGgtacgttagt ... tccggtgcagCCATTTGTAGAGAGTTTATCTAATTGCCCAAAGCATGGACTTCACAACCCA
ttatctgctctgaagcgtatcctcaggcaacgtgcattttttttttccggtgcagCCATTTGTAGAGAGTTTATCTAATTGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAG
tgcattttttttttcc CT-rich tract
tgcatttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgactacggttatatttagacttagttgatattactgtgaatctgttatctgctctgaagcgtatcctcaggcaacgtgcattttttttttccggtgcagCCATTTGTAGAGAGTTTATCTAATTGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - gtgaatc
- - - - - - - - - - - - - - - - - - - - - - - -atctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caggcaa