1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtccagattcggattagggcatgctttaaatagtgaacgatcgacatgcttctaggttcccagttggtctctttcaagtctcacaatacttgttttgcagGGCCTACCGTGCATTTTACATCCTAAACTGGATTTACCGTTACTTCACTGAGGGTCACCACAGCAGATGGATCC
species | Oryza sativa |
transcript | LOC_Os05g45310.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAAGTAGAAATGTGGACAACTTGACTGGACAATATGTATTCTTCCTAGG GGCCTACCGTGCATTTTACATCCTAAACTGGATTTACCGTTACTTCACTGAEST: gi|89162171|gb|CI103707.1|CI103707
genomic: AGAAGTAGAAATGTGGACAACTTGACTGGACAATATGTATTCTTCCTAGGgtatgagttt ... tgttttgcagGGCCTACCGTGCATTTTACATCCTAAACTGGATTTACCGTTACTTCACTGA
EST: AGAAGTAGAAATGTGGACAACTGGACTGGACAATATGTATTCTTCCTAGG GGCCTACCGTGCATTTTACATCCTAAACTGGATTTACCGTTACTTCACTGAEST: gi|88242714|gb|CI242563.1|CI242563
genomic: AGAAGTAGAAATGTGGACAACTTGACTGGACAATATGTATTCTTCCTAGGgtatgagttt ... tgttttgcagGGCCTACCGTGCATTTTACATCCTAAACTGGATTTACCGTTACTTCACTGA
EST: AGAAGTAGAAATGTGGACAACTTGACTGGACAATATGTATTCTTCCTAGG GGCCTACCGTGCATTTTACATCCTAAACTGGATTTACCGTTACTTCACTGAEST: gi|86257989|gb|CI064342.1|CI064342
genomic: AGAAGTAGAAATGTGGACAACTTGACTGGACAATATGTATTCTTCCTAGGgtatgagttt ... tgttttgcagGGCCTACCGTGCATTTTACATCCTAAACTGGATTTACCGTTACTTCACTGA
EST: AGAAGTAGAAATGTGGACAACTTGACTGGACAATATGTATTCTTCCTAGG GGCCTACCGTGCATTTTACATCCTAAACTGGATTTACCGTTACTTCACTGA
genomic: AGAAGTAGAAATGTGGACAACTTGACTGGACAATATGTATTCTTCCTAGGgtatgagttt ... tgttttgcagGGCCTACCGTGCATTTTACATCCTAAACTGGATTTACCGTTACTTCACTGA
atgcttctaggttcccagttggtctctttcaagtctcacaatacttgttttgcagGGCCTACCGTGCATTTTACATCCTAAACTGGATTTACCGTTACTTCACTGAGGGTCACCACAGCAGATGGATCC
gtctcac putative branch site (score: 17)
cttgtttt putative PPT
aatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccagattcggattagggcatgctttaaatagtgaacgatcgacatgcttctaggttcccagttggtctctttcaagtctcacaatacttgttttgcagGGCCTACCGTGCATTTTACATCCTAAACTGGATTTACCGTTACTTCACTGAGGGTCACCACAGCAGATGGATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - -ggcatgc
- - - - - - - - - - - - - - - - - - - - - - - tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaata