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...tagtactcagtattatgtttgcctggttgatcatatctgtgtgaactgtcaagcatccaataagaataatttgattttgctatattatctcctgaattagGTTGGCGAAGATGTTGTATCTGAGTTGGGCAAGGCCATGGAGAGGCAGGGATTAGATATGAAAATTGCAGCATTG
species | Oryza sativa |
transcript | LOC_Os05g44760.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGTCAGGAACGCTCATCAAGTGGACAAAGGGTTTCTCCATCAATGACGCG GTTGGCGAAGATGTTGTATCTGAGTTGGGCAAGGCCATGGAGAGGCAGGGAEST: gi|29629656|gb|CB634665.1|CB634665
genomic: CGTCAGGAACGCTCATCAAGTGGACAAAGGGTTTCTCCATCAATGACGCGgtaaaagtca ... cctgaattagGTTGGCGAAGATGTTGTATCTGAGTTGGGCAAGGCCATGGAGAGGCAGGGA
EST: CGTCAGGAACGCTCATCAAGTGGACAAAGGGTTTCTCCATCAATGACGCG GTTGGCGAAGATGTTGTATCTGAGTTGGGCAAGGCCATGGAGAGGCAGGGAEST: gi|58667655|gb|CK056341.1|CK056341
genomic: CGTCAGGAACGCTCATCAAGTGGACAAAGGGTTTCTCCATCAATGACGCGgtaaaagtca ... cctgaattagGTTGGCGAAGATGTTGTATCTGAGTTGGGCAAGGCCATGGAGAGGCAGGGA
EST: CGTCAGGAACGCTCATCAAGTGGACAAAGGGTTTCTCCATCAATGACGCG GTTGGCGAAGATGTTGTATCTGAGTTGGGCAAGGCCATGGAGAGGCAGGEST: gi|58612363|gb|CK040075.1|CK040075
genomic: CGTCAGGAACGCTCATCAAGTGGACAAAGGGTTTCTCCATCAATGACGCGgtaaaagtca ... cctgaattagGTTGGCGAAGATGTTGTATCTGAGTTGGGCAAGGCCATGGAGAGGCAGG
EST: CGTCAGGAACGCTCATCAAGTGGACGAAGGGTTTCTCCATCAATGACGCG GTTGGCGAAGATGTTGTATCTGAGTTGGGCAAGGCCATGGAGAGGCAGGGA
genomic: CGTCAGGAACGCTCATCAAGTGGACAAAGGGTTTCTCCATCAATGACGCGgtaaaagtca ... cctgaattagGTTGGCGAAGATGTTGTATCTGAGTTGGGCAAGGCCATGGAGAGGCAGGGA
ctgtcaagcatccaataagaataatttgattttgctatattatctcctgaattagGTTGGCGAAGATGTTGTATCTGAGTTGGGCAAGGCCATGGAGAGGCAGGGATTAGATATGAAAATTGCAGCATTG
atttgat putative branch site (score: 34)
ttatctcct putative PPT
aataagaataatttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtactcagtattatgtttgcctggttgatcatatctgtgtgaactgtcaagcatccaataagaataatttgattttgctatattatctcctgaattagGTTGGCGAAGATGTTGTATCTGAGTTGGGCAAGGCCATGGAGAGGCAGGGATTAGATATGAAAATTGCAGCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - ttgcctg
- - - - - - - - - - - - - - - - - - - - -tgaactg
- - - - - - - - - - - - - - - - - - - - - - - - - - gcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaataa