1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...accattttgatccatctgctgttgtgtggacttattcattaacaattagttatttcctgagtaccaagttacattatttttcattatttgcctattacagGGTGATGGAAAATTATTCTACGGAGTGCATGTTGATAATGGTCGTGTCGCAGGGCAAGCAAAGAAAACTCTACGAGAGATTATTGAGAAGTACAATTTGG
species | Oryza sativa |
transcript | LOC_Os05g42350.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTCCTTTGCCCGAATGGCAGTTCAACAGCTACCTAGGATGGCAGGAACAG GGTGGTGGAAAATTATTCTACGGAGTGCATGTTGATAATGGTCGTGTCGCAEST: gi|58686967|gb|CK075654.1|CK075654
genomic: GTCCTTTGCCCGAATGGCAGTTCAACAGCTACCTAGGATGGCAGGAACAGgtaaagatac ... cctattacagGGTGATGGAAAATTATTCTACGGAGTGCATGTTGATAATGGTCGTGTCGCA
EST: GTCCTTTGCCCGAATGGCAGTTCAACAGCTACCTAGGATGGCAGGAACAG GGTGATGGAAAATTATTCTACGGAGTGCATGTTGATAATGGTCGTGTCGCAEST: gi|66947260|gb|AU312104.1|AU312104
genomic: GTCCTTTGCCCGAATGGCAGTTCAACAGCTACCTAGGATGGCAGGAACAGgtaaagatac ... cctattacagGGTGATGGAAAATTATTCTACGGAGTGCATGTTGATAATGGTCGTGTCGCA
EST: GTCCTTTGCCCGAATGGCAGTTCAACAGCTACCTAGGATGGCAGGAACAG GGTGATGGAAAATTATTCTACGGAGTGCATGTTGATAATGGTCGTGTCGCAEST: gi|2311233|gb|C27388.1|C27388
genomic: GTCCTTTGCCCGAATGGCAGTTCAACAGCTACCTAGGATGGCAGGAACAGgtaaagatac ... cctattacagGGTGATGGAAAATTATTCTACGGAGTGCATGTTGATAATGGTCGTGTCGCA
EST: GTCCTTTGCCCGAATGGCAGTTCAACAGCTACCTAGGATGGCAGGAACAG GGTGATGGAAAATTATTCTACGGAGTGCATGTTGATAATGGTCGTGTCGCA
genomic: GTCCTTTGCCCGAATGGCAGTTCAACAGCTACCTAGGATGGCAGGAACAGgtaaagatac ... cctattacagGGTGATGGAAAATTATTCTACGGAGTGCATGTTGATAATGGTCGTGTCGCA
ttagttatttcctgagtaccaagttacattatttttcattatttgcctattacagGGTGATGGAAAATTATTCTACGGAGTGCATGTTGATAATGGTCGTGTCGCAGGGCAAGCAAAGAAAACTCTACGAGAGATTATTGAGAAGTACAATTTGG
tttgcct CT-rich tract
aagttacattattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accattttgatccatctgctgttgtgtggacttattcattaacaattagttatttcctgagtaccaagttacattatttttcattatttgcctattacagGGTGATGGAAAATTATTCTACGGAGTGCATGTTGATAATGGTCGTGTCGCAGGGCAAGCAAAGAAAACTCTACGAGAGATTATTGAGAAGTACAATTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - -tgatcca
- - - - - - - - tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcatt