1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtcaggctgttcatcgaatgattgctttaatgtcaggatatttctctgcttagaaggttgttgtaaacgtattggtatattgtacagGTCTTCCTTTTTGCAAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGA
species | Oryza sativa |
transcript | LOC_Os05g40820.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAAGATATATCCAGGGAAGGGCATTCGCTTTATTCGTGCTGATTCACAG GTCTTCCTTTTTGCAAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTGEST: gi|33810488|gb|CF331132.1|CF331132
genomic: AGAAGATATATCCAGGGAAGGGCATTCGCTTTATTCGTGCTGATTCACAGgtcaggctgt ... tattgtacagGTCTTCCTTTTTGCAAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: AGAAGATATATCCAGGGAAGGGCATTCGCTTTATTCGTGCTGATTCCCAG GTCTTCCTTTTTGCAAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTGEST: gi|89167279|gb|CI252810.1|CI252810
genomic: AGAAGATATATCCAGGGAAGGGCATTCGCTTTATTCGTGCTGATTCACAGgtcaggctgt ... tattgtacagGTCTTCCTTTTTGCAAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: AGAAGATATATCCAGGGAAGGGCATTCGCTTTATTCGTGCTGATTCACAG GTCTTCCTTTTTGCAAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTGEST: gi|8324524|gb|AU091671.1|AU091671
genomic: AGAAGATATATCCAGGGAAGGGCATTCGCTTTATTCGTGCTGATTCACAGgtcaggctgt ... tattgtacagGTCTTCCTTTTTGCAAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: AGAAGATATATCCAGGGAAGGGCATTCGCTTTATTCGTGCTGATTCACAG GTCTTCCTTTTTGCAAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTGEST: gi|5607423|gb|AU076121.1|AU076121
genomic: AGAAGATATATCCAGGGAAGGGCATTCGCTTTATTCGTGCTGATTCACAGgtcaggctgt ... tattgtacagGTCTTCCTTTTTGCAAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: AGAAGATATATCCA-GGAAGGGCATTCGCTTTATTCGTGCTGATTCACAG GTCTTCCTTTTTGCAAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTGEST: gi|88397656|gb|CI684589.1|CI684589
genomic: AGAAGATATATCCAGGGAAGGGCATTCGCTTTATTCGTGCTGATTCACAGgtcaggctgt ... tattgtacagGTCTTCCTTTTTGCAAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: GAAGATATATCCAGGGAAAGGGCATTCGCTTTATTCGTGCTGATTCACAG GTCTTCCTTTTTGCAAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: GAAGATATATCCAGGG-AAGGGCATTCGCTTTATTCGTGCTGATTCACAGgtcaggctgt ... tattgtacagGTCTTCCTTTTTGCAAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTG
tcaggatatttctctgcttagaaggttgttgtaaacgtattggtatattgtacagGTCTTCCTTTTTGCAAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGA
tatattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaggctgttcatcgaatgattgctttaatgtcaggatatttctctgcttagaaggttgttgtaaacgtattggtatattgtacagGTCTTCCTTTTTGCAAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG