1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttcataaaggaatatatatcacaattttctccaagttcatgttgttcctcggtagtttcttctttaacagatgtttgtgtttatgatgttcatctcatagGTGGGATGGCCACGCAGACCCCTAACCAAAATAGCAGCATCCTTAAGAAACAGTTACCTGGTTGCTACACTACATTCAGTTACTATGCCTTCAAAAGCAG
species | Oryza sativa |
transcript | LOC_Os05g40260.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTCAGCTGGAGATGTTAATGTGTATGATCTCCAAGCTTTATGCGACAAG GTGGGATGGCCACGCAGACCCCTAACCAAAATAGCAGCATCCTTAAGAAACEST: gi|4716609|gb|AU057725.1|AU057725
genomic: CTTCAGCTGGAGATGTTAATGTGTATGATCTCCAAGCTTTATGCGACAAGgtgatctttc ... catctcatagGTGGGATGGCCACGCAGACCCCTAACCAAAATAGCAGCATCCTTAAGAAAC
EST: AGCTGGAGATGTTAATGTGTATGANTCTCCAAAGCTTTTATGCCGACAAG GTGGGATGGCCCACGGCAGACCCCTAACCAAAATAGCAGCATCCCTTAAG
genomic: AGCTGGAGATGTTAATGTGTATGA-TCTCC-AAGC-TTTATG-CGACAAGgtgatctttc ... catctcatagGTGGGATGG-CCAC-GCAGACCCCTAACCAAAATAGCAGCAT-CCTTAAG
tcctcggtagtttcttctttaacagatgtttgtgtttatgatgttcatctcatagGTGGGATGGCCACGCAGACCCCTAACCAAAATAGCAGCATCCTTAAGAAACAGTTACCTGGTTGCTACACTACATTCAGTTACTATGCCTTCAAAAGCAG
ctttaac putative branch site (score: 8)
ttcatctc putative PPT
ttctttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcataaaggaatatatatcacaattttctccaagttcatgttgttcctcggtagtttcttctttaacagatgtttgtgtttatgatgttcatctcatagGTGGGATGGCCACGCAGACCCCTAACCAAAATAGCAGCATCCTTAAGAAACAGTTACCTGGTTGCTACACTACATTCAGTTACTATGCCTTCAAAAGCAG
- - -aaaggaat
- - - - - - - - - - - - - - ctccaag
- - - - - - - - - - - - - - - - - - -catgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgatgt