1 5' 3' | 2 5' 3' | 3 5' 3' |
...agaactgctacatggaaagaggctttgatttacgatcatgacttgagcagtaaacaacctccttacttcttccttaacgaaaattgcttacacttttcagGTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGGGATCTCATCAACAGCAGATTACCAGATTCTCTGGTTGGGAAAAATGTGG
species | Oryza sativa |
transcript | LOC_Os05g39110.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG GTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGGEST: gi|163921094|gb|EG714093.1|EG714093
genomic: ACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgctttc ... cacttttcagGTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGG
EST: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG GTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGGEST: gi|86878408|gb|CI319631.1|CI319631
genomic: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgctttc ... cacttttcagGTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGG
EST: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTAC-GCAATGGAGATTT- GTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGGEST: gi|89190354|gb|CI015319.1|CI015319
genomic: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgctttc ... cacttttcagGTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGG
EST: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG GTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGGEST: gi|163926652|gb|EG713668.1|EG713668
genomic: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgctttc ... cacttttcagGTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGG
EST: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG GTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGGEST: gi|163920369|gb|EG711744.1|EG711744
genomic: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgctttc ... cacttttcagGTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGG
EST: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG GTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGGEST: gi|88378356|gb|CI553908.1|CI553908
genomic: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgctttc ... cacttttcagGTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGG
EST: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG GTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGGEST: gi|88205706|gb|CI205555.1|CI205555
genomic: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgctttc ... cacttttcagGTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGG
EST: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG GTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGGEST: gi|29667897|gb|CB664172.1|CB664172
genomic: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgctttc ... cacttttcagGTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGG
EST: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG GTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGGEST: gi|88847448|gb|CI015941.1|CI015941
genomic: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgctttc ... cacttttcagGTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGG
EST: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG GTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGGEST: gi|86250954|gb|CI013964.1|CI013964
genomic: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgctttc ... cacttttcagGTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGG
EST: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG GTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGGEST: gi|88506768|gb|CI434274.1|CI434274
genomic: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgctttc ... cacttttcagGTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGG
EST: CTGCAATGGAGATTTG GTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGGEST: gi|33799656|gb|CF325691.1|CF325691
genomic: CTGCAATGGAGATTTGgtatgctttc ... cacttttcagGTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGG
EST: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG GTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGGEST: gi|27545690|gb|CA767121.2|CA767121
genomic: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgctttc ... cacttttcagGTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGG
EST: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG GTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGGEST: gi|88442386|gb|CI541593.1|CI541593
genomic: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgctttc ... cacttttcagGTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGG
EST: ATGGAGATTTG GTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGGEST: gi|88284643|gb|CI406089.1|CI406089
genomic: ATGGAGATTTGgtatgctttc ... cacttttcagGTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGG
EST: TGAAGTTTACTGCAATGGAGATTTG GTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGGEST: gi|58596493|gb|CK007021.1|CK007021
genomic: TGAAGTTTACTGCAATGGAGATTTGgtatgctttc ... cacttttcagGTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGG
EST: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG GTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGG
genomic: CTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgctttc ... cacttttcagGTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGG
agcagtaaacaacctccttacttcttccttaacgaaaattgcttacacttttcagGTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGGGATCTCATCAACAGCAGATTACCAGATTCTCTGGTTGGGAAAAATGTGG
tgcttac putative branch site (score: 68)
cacttttc CT-rich tract
aaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaactgctacatggaaagaggctttgatttacgatcatgacttgagcagtaaacaacctccttacttcttccttaacgaaaattgcttacacttttcagGTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGGGATCTCATCAACAGCAGATTACCAGATTCTCTGGTTGGGAAAAATGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - ctgctac
- - - - - - - - - - - - - - - - - - - tgacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctta