Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttgctattgatctatgattttgctatatcaattttctaacagggtttataatgttcaattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAGATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATAC

Basic information

species Oryza sativa
transcript LOC_Os05g38550.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g38550.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G012052_T01 (Zea mays), 3'ss of exon 3
gtaagc-ttgctattg------atctatgattttgctatatcaattttctaacagggtttataatgttcaattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAGATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATAC
|||||| | |||||         ||||  ||||    ||  |||  |||| |||    || |  | || |||||| ||||||||||||||| || || ||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||| ||||| ||
gtaagcatcgctatcatgtcttgtctactatttgatcatgccaaagttctgacaattctttttgttttgaattctcagTTTATCCTGATGGACGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAGATCCCAATGGTTATGAGCTTGCAAGCGAACGATGGACACCAGTGCACAC

upper sequence: LOC_Os05g38550.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G007276_T03 (Zea mays), 3'ss of exon 3
gtaagctt-gctattga------------tctatgattttgctatatcaattttctaacagggtttataatgttcaattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAGATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATAC
||||||||  |||| |             ||||  || |    || ||||  |||| |||    |||| || || |||||| ||||||||| |||||||| || ||||||||||| |||||||||||||| ||||||||||  |||||||||||||| ||||||||||||||||| ||||| ||
gtaagcttcactatcggactgtactcatgtctactatctgatcatgtcaaagttctgacaattcttattattttgaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAGATCCCAGTGGTTATGAGCTTGCAAGCGAACGGTGGACACCAGTGCACAC

upper sequence: LOC_Os05g38550.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA12G06960.1 (Glycine max), 3'ss of exon 3
gtaagcttgctatt--gatctatgattttgct---atatcaattttctaacag-ggtttataatgttcaattctt--agTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAGATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATAC
|| ||  |  | ||   || | ||||||||||   || | || |   | | || | | | |  ||||||||| ||  ||| ||||| ||||| || || ||||| || || |||||||| ||||| || ||||| || ||||| ||||||||||| || || ||||||||||| |||||
gttagtgttttttttgaatttgtgattttgctttgatttgaactacatgaaagtgatgttttctgttcaatttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGGATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATAC

upper sequence: LOC_Os05g38550.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA11G14980.1 (Glycine max), 3'ss of exon 3
----gtaagcttgctattgatctatgattttgct---atatcaattttctaacagggttta--------taatgttcaattctt--agTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAGATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATAC
    ||    ||  | || || | ||||||||||   |||  ||     | | || | | |        |  ||||||||| ||  ||| ||||||||||| || || ||||| || || |||||||| ||||| || ||||| || |||||||||||||| || || || ||||||||||| |||||
gttagtttttttttttttaatttgtgattttgctttgataggaacaacatgaaagtgatcagtgatgtttcctgttcaatttttgcagTATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGGATCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATAC

upper sequence: LOC_Os05g38550.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA13G40990.1 (Glycine max), 3'ss of exon 3
gtaagcttgctattgatctatgattttgctat-atcaattttctaacagggtttataatgttcaattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAGATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATAC
||  |  ||  |    | | | ||  ||||   || |||     ||      | ||  |||||||||   ||| |||||||||||||| || ||||| || || |||||||| ||||| || || || || |||||||||||||| || || || ||||| ||||| |||||
gttggtctgacacattttttttatcctgcttcgattaatacatgaaattcaatgatgttgttcaatttgcagTGTATCCTGATGGGCGAGTTTGCATATCAATTCTTCATCCTCCTGGTGACGACCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACGCCTGTTCATAC

upper sequence: LOC_Os05g38550.1 (Oryza sativa), 3'ss of exon 2
lower sequence: AT5G59300.1 (Arabidopsis thaliana), 3'ss of exon 3
---------------------gtaagcttgctattgatctatg---attttgctatat--caattttctaacagggtttataatgttcaattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAGATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATAC
                      |      |  |  |||  |     || |   || |   ||    | | |  || ||  | || ||        ||||||| ||||||| || || ||||| ||||| |||||||| || || || ||||| | ||||||||||||||| ||||| || ||||| ||||| |||||
gttagttttctctctatcggttttgatcggggaaggattcaaaggaatatgaatagaagacagacgtttgaatggtttacttatatttgtcctgcagTTTATTCTGATGGTCGTGTTTGCATATCTATTCTTCATCCTCCCGGTGATGATCCTAGCGGTTATGAGCTTGCAAGCGAGCGTTGGACTCCTGTTCATAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|55414096|gb|CV726472.1|CV726472
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|55442235|gb|CV734437.1|CV734437
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|33692575|gb|CF320814.1|CF320814
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|3760645|gb|C97899.1|C97899
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|33655770|gb|CF278384.1|CF278384
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|29680264|gb|CB676539.1|CB676539
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|33683398|gb|CF311637.1|CF311637
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCTAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|88430899|gb|CI571889.1|CI571889
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCAC
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCAC
EST: gi|33653640|gb|CF276254.1|CF276254
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|33810432|gb|CF331103.1|CF331103
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|29673156|gb|CB669431.1|CB669431
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|3760646|gb|C97900.1|C97900
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|33653883|gb|CF276497.1|CF276497
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|58679873|gb|CK068560.1|CK068560
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGTGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|55409814|gb|CV722190.1|CV722190
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|88388205|gb|CI627744.1|CI627744
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACC
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACC
EST: gi|33658680|gb|CF281293.1|CF281293
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|55827422|gb|AU030093.2|AU030093
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTTGGCGAA
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCT-GGCGAA
EST: gi|33653639|gb|CF276253.1|CF276253
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|38470738|gb|CF954869.1|CF954869
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGTGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|88390199|gb|CI605652.1|CI605652
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|33658073|gb|CF280687.1|CF280687
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|88736853|gb|CI760361.1|CI760361
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATT
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATT
EST: gi|58590916|gb|CF989224.1|CF989224
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGTGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|32948017|gb|BP184589.1|BP184589
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|286322|gb|D15130.1|D15130
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATN                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|88288557|gb|CI663346.1|CI663346
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCC
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCC
EST: gi|33687042|gb|CF315281.1|CF315281
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|33690680|gb|CF318919.1|CF318919
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|88570068|gb|CI661243.1|CI661243
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|55431282|gb|CV728654.1|CV728654
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|29688854|gb|CB685129.1|CB685129
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|8857894|gb|AU095212.1|AU095212
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|86822730|gb|CI251810.1|CI251810
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCATCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|33659205|gb|CF281818.1|CF281818
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|29680263|gb|CB676538.1|CB676538
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|33658853|gb|CF281466.1|CF281466
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|22306772|gb|BQ907994.1|BQ907994
EST:     ATCAGTAAGGTTTACCTCTGAGATGTGGCATCC-AATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGTGAAG
genomic: ATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|66916172|gb|CX103020.1|CX103020
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGTGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|33658681|gb|CF281294.1|CF281294
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|86524276|gb|CI164482.1|CI164482
EST:     GCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|4880952|gb|AU065251.1|AU065251
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGGCGAA
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGG-CGAA
EST: gi|33658854|gb|CF281467.1|CF281467
EST:     AGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: AGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|87023663|gb|CI286414.1|CI286414
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|29616092|gb|CB621104.1|CB621104
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGTGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|33662052|gb|CF293019.1|CF293019
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|29685176|gb|CB681451.1|CB681451
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|33655754|gb|CF278368.1|CF278368
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|33691669|gb|CF319908.1|CF319908
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|29684701|gb|CB680976.1|CB680976
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|29685177|gb|CB681452.1|CB681452
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|58673748|gb|CK062434.1|CK062434
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TATATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCT
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCT
EST: gi|33654768|gb|CF277382.1|CF277382
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|29684702|gb|CB680977.1|CB680977
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
EST: gi|29688855|gb|CB685130.1|CB685130
EST:     GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                         TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG
genomic: GAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 71 (upstream exon), 75 (downstream exon)
Score: 241

TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgc ... caattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAGATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATAC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatgattttgctatatcaattttctaacagggtttataatgttcaattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAGATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATAC
                       ttctaac  putative branch site (score: 241)
                                                ttctt  putative PPT
             tatatcaattttctaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagcttgctattgatctatgattttgctatatcaattttctaacagggtttataatgttcaattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAGATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA