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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtgtattgatccatgcattttagtgaaaactgcacataactttgcattacactgattgaattccactcaagcagGTAAAGGTGATGTCTACACATGGGGTTGGAAAGAATGCGTTCCAACTGGAAGGGTCATTGCAGACCATTCTGCAACTGGGGCTATGGATTGTGATAAAAG

Basic information

species Oryza sativa
transcript LOC_Os05g38270.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g38270.2 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv08s0007g00930.t01 (Vitis vinifera), 3'ss of exon 3
-------------------------------------------------------------------------------------------------------gttgtgta-ttgatccatgcattttagtgaaaact-gcacataactttgcattacactg-attgaattccactcaagcagGTAAAGGTGATGTCTACACATGGGGTTGGAAAGAATGCGTTCCAACTGGAAGGGTCATTGCAGACCATTCTGCAACTGGGGCTATGGATTGTGATAAAAG--
                                                                                                        || || |     |  | |  ||||  ||   | |   | | || ||  || ||      ||| | |||       ||||  |||||||| |  ||||||||||||||||||||||| |||||  |||| |  ||| |    ||   | |||        ||| || |  |   | |     
gtaccttccctttctcagagcatttctttcttatttatctattgagtactatgtgcaaaaaagggggaaaaatggctagaagcttcttgcttgcccatcaaagcttatggagcctttttaagttttttgatggctatttataaaaaatttatcagtatgtcatattcatttctcaatttgcagACAAAGGTGAAGCATACACATGGGGTTGGAAAGAATGTGTTCCCTCTGGGAAAGTCCTCCTTGATTCTACTGGGGT--ACGCTTTGAAAAGGATTCATTTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagtgaaaactgcacataactttgcattacactgattgaattccactcaagcagGTAAAGGTGATGTCTACACATGGGGTTGGAAAGAATGCGTTCCAACTGGAAGGGTCATTGCAGACCATTCTGCAACTGGGGCTATGGATTGTGATAAAAG
                              cactgat  putative branch site (score: 3)
                                         ttccactc  putative PPT
                ataacttt  TA-rich tract