1 5' 3' | 2 5' 3' | 3 5' 3' |
...catttttatgttctttcgtagatatcagaagtccttgaatctacaaatcagcattctgattgctcactgctatccatctttttttctgaaacatttgcagCCAGGTTATGAGCGTCTTTGCTGCCTCCGATGCATACAGACACGAGACCACAACTTTGCAACCACTTGTGTCTGTAGGGTCCCCAAGCACCTCAGGGAAG
species | Oryza sativa |
transcript | LOC_Os05g37390.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCAAGGTCCATCCTGATAAAAATCTGATC-CGAAGTGGAAAAAG CCAGGTTATGAGCGTCTTTGCTGCCTCCGATGCATACAGACACGAGACCACEST: gi|55432537|gb|CV729289.1|CV729289
genomic: CCAAGGT-CATGCTGATAAAAATCTGATCGCGAAGTGGAAAAAGgtaagcatac ... acatttgcagCCAGGTTATGAGCGTCTTTGCTGCCTCCGATGCATACAGACACGAGACCAC
EST: TCATGCTGATAAAAATCTGATCGCGAAGTGGAAAAAG CCAGGTTATGAGCGTCTTTGCTGCCTCCGATGCATACAGACACGAGACCACEST: gi|33659505|gb|CF282118.1|CF282118
genomic: TCATGCTGATAAAAATCTGATCGCGAAGTGGAAAAAGgtaagcatac ... acatttgcagCCAGGTTATGAGCGTCTTTGCTGCCTCCGATGCATACAGACACGAGACCAC
EST: GTTTGGACCAAGGTCATGCTGATAAAAATCTGATCGCGAAGTGGAAAAAG CCAGGTTATGAGCGTCTTTGCTGCCTCCGATGCATACAGACACGAGACCACEST: gi|33802337|gb|CF327042.1|CF327042
genomic: GTTTGGACCAAGGTCATGCTGATAAAAATCTGATCGCGAAGTGGAAAAAGgtaagcatac ... acatttgcagCCAGGTTATGAGCGTCTTTGCTGCCTCCGATGCATACAGACACGAGACCAC
EST: GTTTGGACCAAGGTCATGCTGATAAAAATCTGATCGCGAAGTGGAAAAAG CCAGGTTATGAGCGTCTTTGCTGCCTCCGATGCATACAGACACGAGACCACEST: gi|87026424|gb|CI252378.1|CI252378
genomic: GTTTGGACCAAGGTCATGCTGATAAAAATCTGATCGCGAAGTGGAAAAAGgtaagcatac ... acatttgcagCCAGGTTATGAGCGTCTTTGCTGCCTCCGATGCATACAGACACGAGACCAC
EST: GTTTGGACCAAGGTCATGCTGATAAAAATCTGATCGCGAAGTGGAAAAAG CCAGGTTATGAGCGTCTTTGCTGCCTCCGATGCATACAGACACGAGACCACEST: gi|86594402|gb|CI251274.1|CI251274
genomic: GTTTGGACCAAGGTCATGCTGATAAAAATCTGATCGCGAAGTGGAAAAAGgtaagcatac ... acatttgcagCCAGGTTATGAGCGTCTTTGCTGCCTCCGATGCATACAGACACGAGACCAC
EST: GTTTGGACCAAGGTCATGCTGATAAAAATCTGATCGCGAAGTGGAAAAAG CCAGGTTATGAGCGTCTTTGCTGCCTCCGATGCATACAGACACGAGACCACEST: gi|38477238|gb|CF961371.1|CF961371
genomic: GTTTGGACCAAGGTCATGCTGATAAAAATCTGATCGCGAAGTGGAAAAAGgtaagcatac ... acatttgcagCCAGGTTATGAGCGTCTTTGCTGCCTCCGATGCATACAGACACGAGACCAC
EST: GTTTGGACCAAGGTCATGCTGATAAAAATCTGATCGCGAAGTGGAAAAAG CCAGGTTATGAGCGTCTTTGCTGCCTCCGATGCATACAGACACGAGACCACEST: gi|55432535|gb|CV729288.1|CV729288
genomic: GTTTGGACCAAGGTCATGCTGATAAAAATCTGATCGCGAAGTGGAAAAAGgtaagcatac ... acatttgcagCCAGGTTATGAGCGTCTTTGCTGCCTCCGATGCATACAGACACGAGACCAC
EST: GTTTGGACCAAGGTCATGCTGATAAAAATCTGATCGCGAAGTGGAAAAAG CCAGGTTATGAGCGTCTTTGCTGCCTCCGATGCATACAGACACGAGACCACEST: gi|88531991|gb|CI461444.1|CI461444
genomic: GTTTGGACCAAGGTCATGCTGATAAAAATCTGATCGCGAAGTGGAAAAAGgtaagcatac ... acatttgcagCCAGGTTATGAGCGTCTTTGCTGCCTCCGATGCATACAGACACGAGACCAC
EST: GCGAAGTGGAAAAAG GCAGGTTATGAGCGTCTTTGCTGCCTCCGATGCATACAGACACGAGACCAC
genomic: GCGAAGTGGAAAAAGgtaagcatac ... acatttgcagCCAGGTTATGAGCGTCTTTGCTGCCTCCGATGCATACAGACACGAGACCAC
aatcagcattctgattgctcactgctatccatctttttttctgaaacatttgcagCCAGGTTATGAGCGTCTTTGCTGCCTCCGATGCATACAGACACGAGACCACAACTTTGCAACCACTTGTGTCTGTAGGGTCCCCAAGCACCTCAGGGAAG
tgctcac putative branch site (score: 41)
atcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catttttatgttctttcgtagatatcagaagtccttgaatctacaaatcagcattctgattgctcactgctatccatctttttttctgaaacatttgcagCCAGGTTATGAGCGTCTTTGCTGCCTCCGATGCATACAGACACGAGACCACAACTTTGCAACCACTTGTGTCTGTAGGGTCCCCAAGCACCTCAGGGAAG
- - - - tgttctt
- - - - - - - - - - - - - - - gtccttg
- - - - - - - - - - - - - - - - - - - - ctacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattg