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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcactgcttctcttgatcagtaacagtctcctacagtttcttactgactgcaacagaaaaaaagtgttcttgcttaattagctgctcactgtctgctcctcttgtttctttgattaattgctttatagcagAACTCGCAGTCAGTAGGGAGCACCACTGACTCTAGCTCAGCTCAGAACACAATGTCACAGGCCGAGTTGGTGTCCCCAGCGAGCATGAGGTCCGACTCTG

Basic information

species Oryza sativa
transcript LOC_Os05g37170.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g37170.3 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G000842_T02 (Zea mays), 3'ss of exon 4
gtaagcactgcttct-cttgatcagtaacagtctcctacagtttctt-actgactgcaacagaaaaaaagtgttcttgcttaattagctgctcactgtctgctcctct-tgtttct-ttgattaattgctttatagcagAACTCGCAGTCAGTAGGGAGCACCACTGACTCTAGCTCAGCTCAGAACACAATGTCACAGGCCGAGTTGGTGTCCCCAGCGAGCATGAGGTCCGACTCTG
|||||||||| ||||  || |||| |  ||||  ||||||||| |||  |||||   ||| | | ||| ||||||||| ||||||| |||||||||| || || || | || | || |||||  ||||||    ||   |||||||| |||||||||||||||||||| || ||||||| ||||||||  ||| ||||| ||||| |||||||||||| |||||||||| ||||||   
gtaagcactgtttctgtttcatcattcgcagtgccctacagttcctttgctgacca-aaccggacaaaggtgttcttggttaattaactgctcactgccttcttctgtctgctcctcttgatggattgctgcgcagGGTAACTCGCACTCAGTAGGGAGCACCACTGAGTCGAGCTCAGGTCAGAACAGTATGCCACAGACCGAGCTGGTGTCCCCAGGGAGCATGAGGGCCGACT---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688746|gb|CK077433.1|CK077433
EST:     TGGAAATCTTCCCTTCATGGCCAATGAGTCATCTACAGGAGCCATACAGT                         AACTCGCAGTCAGTAGGGAGCACCACTGACTCTAGCTCAGCTCAGAACACA
genomic: TGGAAATCTTCCCTTCATGGCCAATGAGTCATCTACAGGAGCCATACAGTgtaagcactg ... tttatagcagAACTCGCAGTCAGTAGGGAGCACCACTGACTCTAGCTCAGCTCAGAACACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attagctgctcactgtctgctcctcttgtttctttgattaattgctttatagcagAACTCGCAGTCAGTAGGGAGCACCACTGACTCTAGCTCAGCTCAGAACACAATGTCACAGGCCGAGTTGGTGTCCCCAGCGAGCATGAGGTCCGACTCTG
                                         ttgcttt  CT-rich tract
                            tttctttgattaatt  TA-rich tract