1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ataactggcaaaatttcatggtttgttctgtgtggagtaataaaagttatgtcttgtattaatattttgttcatgacaaatggttatcacatcttttcagGCCTTGGGTTTTTGACTTCCTTGCTATTCATATTCCTAGTTGGAATATTTGTTTCTTCATGGGTGGGTTCAACTGTCTTTTGGATTGGAGAATGGTTTAT
species | Oryza sativa |
transcript | LOC_Os05g36110.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGATGGATTTTTCAGTCCACTGTATGCAAAGCTTGGATTTGATATATTTG GCCTTGGGTTTTTGACTTCCTTGCTATTCATATTCCTAGTTGGAATATTTGEST: gi|13896941|gb|AU183277.1|AU183277
genomic: TGATGGATTTTTCAGTCCACTGTATGCAAAGCTTGGATTTGATATATTTGgtaactcttg ... atcttttcagGCCTTGGGTTTTTGACTTCCTTGCTATTCATATTCCTAGTTGGAATATTTG
EST: TGATGGATTTTTCAGTCCACTGTATGCAAAGCTTGGATTTGATATATTTG GCCTTGGGTTTTTGACTTCCTTGCTATTCATATTCCTAGTTEST: gi|58695852|gb|CK084539.1|CK084539
genomic: TGATGGATTTTTCAGTCCACTGTATGCAAAGCTTGGATTTGATATATTTGgtaactcttg ... atcttttcagGCCTTGGGTTTTTGACTTCCTTGCTATTCATATTCCTAGTT
EST: TGATGGATTTTTCAGTCCACTGTATGCAAAGCTTGGATTTGATATATTTG GCCTTGGGTTTTTGACTTCCTTGCTATTCATATTCCTAGTTGGAATATTTGEST: gi|87012610|gb|CI307358.1|CI307358
genomic: TGATGGATTTTTCAGTCCACTGTATGCAAAGCTTGGATTTGATATATTTGgtaactcttg ... atcttttcagGCCTTGGGTTTTTGACTTCCTTGCTATTCATATTCCTAGTTGGAATATTTG
EST: TGATGGATTTTTCAGTCCACTGTATGCAAAGCTTGGATTTGATATATTTG GCCTTGGGTTTTTGACTTCCTTGCTATTCATATTCCTAGTTGGAATATTTG
genomic: TGATGGATTTTTCAGTCCACTGTATGCAAAGCTTGGATTTGATATATTTGgtaactcttg ... atcttttcagGCCTTGGGTTTTTGACTTCCTTGCTATTCATATTCCTAGTTGGAATATTTG
gttatgtcttgtattaatattttgttcatgacaaatggttatcacatcttttcagGCCTTGGGTTTTTGACTTCCTTGCTATTCATATTCCTAGTTGGAATATTTGTTTCTTCATGGGTGGGTTCAACTGTCTTTTGGATTGGAGAATGGTTTAT
tattaat putative branch site (score: 21)
catcttttc putative PPT
ttgtattaatattttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataactggcaaaatttcatggtttgttctgtgtggagtaataaaagttatgtcttgtattaatattttgttcatgacaaatggttatcacatcttttcagGCCTTGGGTTTTTGACTTCCTTGCTATTCATATTCCTAGTTGGAATATTTGTTTCTTCATGGGTGGGTTCAACTGTCTTTTGGATTGGAGAATGGTTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - ggcaaaa
- - - - - - -tttcatg
- - - - - - - - - - - -tgttctg
- - - - - - - - - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - -tgtcttg