1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacaactgggatgtgttccctttgcttgtaaaatttcctggttagaacccatggtttgaattagttttaatctgtccatgcacatgcgtggtgaatgcgtaatctttgtggagcagTGCTGTTCTAGCCCATTTCATCCTGAATGAGAAGCTGCAACGGATGGGAGTGCTGGGCTGCGTGCTCTGTATAGTCGGATCAACAGTGATCATCCTTCAT
species | Oryza sativa |
transcript | LOC_Os05g35570.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCACCGGCTGTTCTGGTTACTCCCCTCGGCGCTCTCAGCATAATTGTTAG TGCTGTTCTAGCCCATTTCATCCTGAATGAGAAGCTGCAACGGATGGGAGTEST: gi|58669203|gb|CK057889.1|CK057889
genomic: GCACCGGCTGTTCTGGTTACTCCCCTCGGCGCTCTCAGCATAATTGTTAGgtacaactgg ... tgtggagcagTGCTGTTCTAGCCCATTTCATCCTGAATGAGAAGCTGCAACGGATGGGAGT
EST: GCACCGGCTGTTCTGGTTACTCCCCTCGGCGCTCTCAGCATAATTGTTAG TGCTGTTCTAGCCCATTTCATCCTGAATGAGAAGCTGCAACGGATGGGAGTEST: gi|58681506|gb|CK070193.1|CK070193
genomic: GCACCGGCTGTTCTGGTTACTCCCCTCGGCGCTCTCAGCATAATTGTTAGgtacaactgg ... tgtggagcagTGCTGTTCTAGCCCATTTCATCCTGAATGAGAAGCTGCAACGGATGGGAGT
EST: GCACCGGCTGTTCTGGTTACTCCCCTCGGCGCTCTCAGCATAATTGTTAG TGCTGTTCTAGCCCATTTCATCCTGAATGAGAAGCTGGAACGGGATGGGEST: gi|58670943|gb|CK059629.1|CK059629
genomic: GCACCGGCTGTTCTGGTTACTCCCCTCGGCGCTCTCAGCATAATTGTTAGgtacaactgg ... tgtggagcagTGCTGTTCTAGCCCATTTCATCCTGAATGAGAAGCTGCAACGG-ATGGG
EST: GCACCGGCTGTTCTGGTTACTCCCCTCGGCGCTCTCAGCATAATTGTTAG TGCTGTTCTAGCCCATTTCATCCTGAATGAGAAGCTGCAACGGATGGGAGTEST: gi|88377219|gb|CI600374.1|CI600374
genomic: GCACCGGCTGTTCTGGTTACTCCCCTCGGCGCTCTCAGCATAATTGTTAGgtacaactgg ... tgtggagcagTGCTGTTCTAGCCCATTTCATCCTGAATGAGAAGCTGCAACGGATGGGAGT
EST: GCACCGGCTGTTCTGGTTACTCCCCTCGGCGCTCTCAGCATAATTGTTAG TGCTGTTCTAGCCCATTTCATCCTGAATGAGAAGCTGCAACGGATGGGAGT
genomic: GCACCGGCTGTTCTGGTTACTCCCCTCGGCGCTCTCAGCATAATTGTTAGgtacaactgg ... tgtggagcagTGCTGTTCTAGCCCATTTCATCCTGAATGAGAAGCTGCAACGGATGGGAGT
tagttttaatctgtccatgcacatgcgtggtgaatgcgtaatctttgtggagcagTGCTGTTCTAGCCCATTTCATCCTGAATGAGAAGCTGCAACGGATGGGAGTGCTGGGCTGCGTGCTCTGTATAGTCGGATCAACAGTGATCATCCTTCAT
ttttaat putative branch site (score: 11)
tctttgt putative PPT
taatcttt TA-rich tract