1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atactatatttgaatggttggctaagtttttgcttgacctattatggttgactagttgtgaagtgattccggctgagcgctttattcctattttcttcagATTTCTGGACAAGACAAGCAATCTTCTAATGGAAATATTCCTGTAACACCTAAAGTGAACCCTATACCGCCACCAAAGCCGGCTCAGCTAATGAGATCTA
species | Oryza sativa |
transcript | LOC_Os05g35274.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCTATTTTCTGGCCTTGTTCGTCTTCATAATAGAACACTTAGGTTTGCG ATTTCTGGACAAGACAAGCAATCTTCTAATGGAAATATTCCTGTAACACCTEST: gi|66918111|gb|CX104959.1|CX104959
genomic: AGCTATTTTCTGGCCTTGTTCGTCTTCATAATAGAACACTTAGATTTGCGgtgcgtttct ... ttttcttcagATTTCTGGACAAGACAAGCAATCTTCTAATGGAAATATTCCTGTAACACCT
EST: AGCTATTTTCTGGCCTTGTTCGTCTTCATAATAGAACACTTAGATTTGCG ATTTCTGGACAAGACAAGCAATCTTCTAATGGAAATATTCCTGTAACACCT
genomic: AGCTATTTTCTGGCCTTGTTCGTCTTCATAATAGAACACTTAGATTTGCGgtgcgtttct ... ttttcttcagATTTCTGGACAAGACAAGCAATCTTCTAATGGAAATATTCCTGTAACACCT
ggttgactagttgtgaagtgattccggctgagcgctttattcctattttcttcagATTTCTGGACAAGACAAGCAATCTTCTAATGGAAATATTCCTGTAACACCTAAAGTGAACCCTATACCGCCACCAAAGCCGGCTCAGCTAATGAGATCTA
ggttgac putative branch site (score: 8)
cgctttattcctattt putative PPT
tttattcctatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atactatatttgaatggttggctaagtttttgcttgacctattatggttgactagttgtgaagtgattccggctgagcgctttattcctattttcttcagATTTCTGGACAAGACAAGCAATCTTCTAATGGAAATATTCCTGTAACACCTAAAGTGAACCCTATACCGCCACCAAAGCCGGCTCAGCTAATGAGATCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - tgaatgg
- - - - - - -atggttg
- - - - - - - - - - - - - - -ttgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccggctg