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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtccgaaacgcaaacaatcaagtacagtagacagtctctagtcgtgatcgaattgttgctacttagGTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCGCGCGAAGCAGAACGGCGGGCTGGGCGCGGCGGTGCCGTCGAAGCGGGGG

Basic information

species Oryza sativa
transcript LOC_Os05g35266.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29670531|gb|CB666806.1|CB666806
EST:     AACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCA                         GTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCG
genomic: AACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCAgtaagtccga ... tgctacttagGTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCG
EST: gi|29670488|gb|CB666763.1|CB666763
EST:     AACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCA                         GTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCG
genomic: AACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCAgtaagtccga ... tgctacttagGTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCG
EST: gi|88406081|gb|CI593861.1|CI593861
EST:     AACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCA                         GTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGAGGTGGAGCG
genomic: AACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCAgtaagtccga ... tgctacttagGTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCG
EST: gi|58671661|gb|CK060347.1|CK060347
EST:     AACCCGAACGACATCATGAACGAGGTGTCAAGAAGTCACCAAGCAATCCA                         GTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCG
genomic: AACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCAgtaagtccga ... tgctacttagGTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacaatcaagtacagtagacagtctctagtcgtgatcgaattgttgctacttagGTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCGCGCGAAGCAGAACGGCGGGCTGGGCGCGGCGGTGCCGTCGAAGCGGGGG
                                       aattgtt  TA-rich tract